Coverage Summary

Module Bio-Phylo
Version v2.0.1
Database: /root/.cpan/build/Bio-Phylo-v2.0.1-0/cover_db
Report date: 2017-11-01 00:25:52
Perl version: v5.26.1
OS: linux
Thresholds: < 75% < 90% < 100% = 100%

Restrict to regex:

file stmt bran cond sub pod time total
Total 59.3 43.0 42.4 73.6 79.6 100.0 56.9
blib/lib/Bio/Phylo.pm 85.7 56.5 47.6 94.8 100.0 5.1 79.2
blib/lib/Bio/Phylo/EvolutionaryModels.pm 48.5 36.4 25.8 74.4 61.9 0.9 44.7
blib/lib/Bio/Phylo/Factory.pm 50.8 22.7 n/a 70.0 100.0 0.8 47.8
blib/lib/Bio/Phylo/Forest.pm 63.7 40.2 30.0 75.0 100.0 0.0 58.6
blib/lib/Bio/Phylo/Forest/DrawNodeRole.pm 82.6 57.1 n/a 88.8 100.0 6.4 79.1
blib/lib/Bio/Phylo/Forest/DrawTreeRole.pm 59.3 50.0 n/a 84.6 100.0 0.2 60.7
blib/lib/Bio/Phylo/Forest/Node.pm 85.3 68.7 66.6 96.1 100.0 3.5 82.7
blib/lib/Bio/Phylo/Forest/NodeRole.pm 73.5 59.0 66.9 69.3 75.3 4.3 69.6
blib/lib/Bio/Phylo/Forest/Tree.pm 87.7 50.0 n/a 94.1 100.0 0.2 84.6
blib/lib/Bio/Phylo/Forest/TreeRole.pm 45.1 38.1 41.8 54.1 83.7 1.4 45.9
blib/lib/Bio/Phylo/Generator.pm 100.0 100.0 48.1 100.0 100.0 0.0 94.0
blib/lib/Bio/Phylo/IO.pm 68.7 66.6 71.4 78.5 100.0 3.5 70.8
blib/lib/Bio/Phylo/Identifiable.pm 86.3 50.0 n/a 85.7 100.0 22.3 85.2
blib/lib/Bio/Phylo/Listable.pm 74.5 48.4 60.7 82.5 100.0 2.5 71.3
blib/lib/Bio/Phylo/ListableRole.pm 67.5 63.7 78.5 84.2 100.0 6.0 70.1
blib/lib/Bio/Phylo/Matrices.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Character.pm 69.2 16.6 0.0 94.1 100.0 0.0 61.2
blib/lib/Bio/Phylo/Matrices/Characters.pm 69.2 n/a n/a 80.0 100.0 0.0 72.9
blib/lib/Bio/Phylo/Matrices/Datatype.pm 44.8 34.9 20.0 77.7 100.0 2.9 46.1
blib/lib/Bio/Phylo/Matrices/Datatype/Continuous.pm 89.1 83.3 66.6 88.8 100.0 0.0 88.3
blib/lib/Bio/Phylo/Matrices/Datatype/Dna.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Protein.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Rna.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Sanger.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Standard.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datum.pm 63.9 40.0 41.1 85.0 100.0 1.8 60.7
blib/lib/Bio/Phylo/Matrices/DatumRole.pm 30.1 18.1 3.7 38.1 43.7 0.2 26.4
blib/lib/Bio/Phylo/Matrices/Matrix.pm 87.9 45.4 37.5 100.0 100.0 0.2 82.0
blib/lib/Bio/Phylo/Matrices/MatrixRole.pm 30.3 19.8 10.8 37.2 41.2 0.1 27.8
blib/lib/Bio/Phylo/Matrices/TypeSafeData.pm 88.7 69.2 47.6 90.9 100.0 0.1 82.1
blib/lib/Bio/Phylo/Mediators/TaxaMediator.pm 90.5 79.4 85.7 91.6 100.0 0.9 87.9
blib/lib/Bio/Phylo/Models/Substitution/Binary.pm 23.6 0.0 0.0 46.1 100.0 0.0 26.7
blib/lib/Bio/Phylo/Models/Substitution/Dna.pm 31.4 12.9 2.3 57.8 100.0 0.3 30.3
blib/lib/Bio/Phylo/Models/Substitution/Dna/GTR.pm 100.0 n/a n/a 100.0 100.0 0.0 100.0
blib/lib/Bio/Phylo/NeXML/DOM.pm 46.6 0.0 0.0 41.1 100.0 0.0 44.4
blib/lib/Bio/Phylo/NeXML/Entities.pm 17.6 0.0 0.0 60.0 100.0 0.1 14.8
blib/lib/Bio/Phylo/NeXML/Meta.pm 68.1 20.0 33.3 72.7 100.0 0.2 65.8
blib/lib/Bio/Phylo/NeXML/Writable.pm 62.7 45.8 38.2 79.6 100.0 5.6 61.6
blib/lib/Bio/Phylo/Parsers/Abstract.pm 66.6 55.0 25.0 89.2 n/a 0.9 64.1
blib/lib/Bio/Phylo/Parsers/Adjacency.pm 98.3 72.2 n/a 100.0 n/a 0.0 92.9
blib/lib/Bio/Phylo/Parsers/Fastq.pm 100.0 63.6 75.0 100.0 n/a 1.5 89.5
blib/lib/Bio/Phylo/Parsers/Figtree.pm 96.6 80.0 88.8 100.0 n/a 0.0 93.8
blib/lib/Bio/Phylo/Parsers/Newick.pm 96.2 91.2 83.5 92.8 n/a 9.3 91.2
blib/lib/Bio/Phylo/Parsers/Nexus.pm 82.5 69.1 58.4 85.1 n/a 0.1 75.6
blib/lib/Bio/Phylo/Parsers/Nhx.pm 95.0 66.6 33.3 100.0 n/a 0.0 87.3
blib/lib/Bio/Phylo/Parsers/Phylip.pm 93.7 62.5 62.5 100.0 n/a 0.0 84.9
blib/lib/Bio/Phylo/Parsers/Table.pm 100.0 n/a 100.0 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Parsers/Taxlist.pm 74.3 12.5 75.0 100.0 n/a 0.0 67.8
blib/lib/Bio/Phylo/Project.pm 34.5 20.0 0.0 60.0 100.0 0.0 38.1
blib/lib/Bio/Phylo/Set.pm 89.4 50.0 n/a 75.0 100.0 0.0 83.3
blib/lib/Bio/Phylo/Taxa.pm 48.6 13.6 57.1 61.9 100.0 0.1 49.4
blib/lib/Bio/Phylo/Taxa/TaxaLinker.pm 78.5 50.0 66.6 76.9 100.0 0.0 77.6
blib/lib/Bio/Phylo/Taxa/Taxon.pm 82.0 66.6 50.0 87.5 100.0 0.1 80.6
blib/lib/Bio/Phylo/Taxa/TaxonLinker.pm 88.8 100.0 100.0 90.9 100.0 0.0 90.9
blib/lib/Bio/Phylo/Treedrawer.pm 62.0 44.1 30.9 77.0 92.6 0.0 60.1
blib/lib/Bio/Phylo/Treedrawer/Abstract.pm 38.8 33.6 28.5 46.4 n/a 0.0 37.6
blib/lib/Bio/Phylo/Treedrawer/Processing.pm 63.9 33.3 10.0 77.7 n/a 0.0 56.6
blib/lib/Bio/Phylo/Treedrawer/Svg.pm 46.0 30.0 14.8 76.1 n/a 0.0 40.0
blib/lib/Bio/Phylo/Unparsers/Abstract.pm 96.0 75.0 n/a 83.3 n/a 0.0 91.4
blib/lib/Bio/Phylo/Unparsers/Adjacency.pm 92.3 42.8 n/a 100.0 n/a 0.0 83.7
blib/lib/Bio/Phylo/Unparsers/Figtree.pm 96.0 60.0 n/a 100.0 n/a 0.0 91.4
blib/lib/Bio/Phylo/Unparsers/Hennig86.pm 92.5 50.0 33.3 100.0 n/a 0.0 86.4
blib/lib/Bio/Phylo/Unparsers/Newick.pm 36.6 11.5 n/a 85.7 n/a 0.0 33.6
blib/lib/Bio/Phylo/Unparsers/Nexus.pm 45.4 25.0 33.3 100.0 n/a 0.0 40.8
blib/lib/Bio/Phylo/Unparsers/Nhx.pm 77.2 30.0 n/a 80.0 n/a 0.0 70.3
blib/lib/Bio/Phylo/Unparsers/Pagel.pm 85.7 83.3 n/a 100.0 n/a 0.0 86.9
blib/lib/Bio/Phylo/Util/CONSTANT.pm 100.0 100.0 100.0 100.0 100.0 2.1 100.0
blib/lib/Bio/Phylo/Util/CONSTANT/Int.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Util/Dependency.pm 93.3 n/a n/a 83.3 n/a 0.0 90.4
blib/lib/Bio/Phylo/Util/Exceptions.pm 89.4 46.0 0.0 94.0 100.0 0.5 82.2
blib/lib/Bio/Phylo/Util/IDPool.pm 85.7 50.0 n/a 80.0 n/a 0.2 80.9
blib/lib/Bio/Phylo/Util/Logger.pm 56.7 35.9 27.7 62.9 94.1 10.1 52.6
blib/lib/Bio/Phylo/Util/MOP.pm 63.0 40.0 25.0 67.2 0.0 2.6 55.7
blib/lib/Bio/Phylo/Util/Math.pm 72.0 28.5 n/a 75.0 100.0 0.0 65.2
blib/lib/Bio/Phylo/Util/OptionalInterface.pm 90.9 50.0 n/a 100.0 n/a 0.0 89.6
blib/lib/Bio/Phylo/Util/StackTrace.pm 61.5 83.3 n/a 80.0 100.0 0.1 67.3
blib/lib/Bio/PhyloRole.pm 81.9 75.0 35.0 92.8 100.0 0.6 75.2