| line |
true |
false |
branch |
|
58
|
787 |
50 |
if ($class eq 'Bio::Phylo::Matrices::Datatype') { }
|
|
60
|
0 |
787 |
unless ($type)
|
|
63
|
1 |
786 |
if ($type eq 'Nucleotide')
|
|
77
|
50 |
0 |
if ${"${class}::LOOKUP";}
|
|
79
|
50 |
0 |
if ${"${class}::MISSING";}
|
|
80
|
10 |
40 |
if ${"${class}::GAP";}
|
|
116
|
756 |
0 |
if (defined $lookup) { }
|
|
117
|
756 |
0 |
if (&looks_like_instance($lookup, 'HASH')) { }
|
|
149
|
109 |
0 |
if ($missing ne $self->get_gap) { }
|
|
175
|
69 |
0 |
if (not $gap eq $self->get_missing) { }
|
|
219
|
0 |
0 |
if (my $lookup = $self->get_lookup) { }
|
|
220
|
0 |
0 |
if (exists $lookup->{$state}) { }
|
|
222
|
0 |
0 |
unless $meta{$id}
|
|
223
|
0 |
0 |
unless $meta{$id}{$state}
|
|
254
|
0 |
0 |
if ($meta{$id} and $meta{$id}{$state}) { }
|
|
258
|
0 |
0 |
if ($meta_array->[$i]->get_id == $meta_id)
|
|
318
|
0 |
0 |
if ($_[0]) { }
|
|
349
|
0 |
0 |
if (my $lookup = $self->get_lookup)
|
|
363
|
0 |
0 |
$_[0] ? :
|
|
388
|
82250 |
0 |
if (my $lookup = $self->get_lookup)
|
|
389
|
82250 |
0 |
if (my $map = $$lookup{uc $symbol})
|
|
416
|
0 |
0 |
if ($lookup) { }
|
|
420
|
0 |
0 |
if (scalar @syms == scalar @states)
|
|
425
|
0 |
0 |
if ($syms[$i] eq $states[$j])
|
|
430
|
0 |
0 |
unless $seen
|
|
434
|
0 |
0 |
if $seen_all == scalar @syms
|
|
440
|
0 |
0 |
if (not $self->get_type =~ /standard/i) { }
|
|
448
|
0 |
0 |
unless (exists $lookup->{$char})
|
|
480
|
82476 |
654 |
if (exists $lookup{$id}) { }
|
|
487
|
654 |
0 |
if (&looks_like_class($class))
|
|
516
|
137 |
1506 |
defined $missing ? :
|
|
535
|
99 |
851 |
defined $gap ? :
|
|
554
|
0 |
0 |
if ($meta{$id} and $meta{$id}{$state})
|
|
602
|
50 |
15 |
if (my $lookup = $self->get_lookup)
|
|
604
|
39 |
11 |
if ($mapping and ref $mapping eq 'ARRAY')
|
|
630
|
0 |
1451 |
if (ref $arg eq 'ARRAY') { }
|
|
|
743 |
708 |
elsif (UNIVERSAL::can($arg, 'get_char')) { }
|
|
637
|
0 |
708 |
if (length $arg > 1) { }
|
|
646
|
739 |
712 |
unless @data
|
|
651
|
0 |
82978 |
unless defined $char
|
|
652
|
82970 |
8 |
if $symbols{uc $char}
|
|
676
|
85 |
34 |
if $self->get_id == $model->get_id
|
|
677
|
0 |
34 |
if $self->get_type ne $model->get_type
|
|
682
|
0 |
102 |
if defined $self_prop and defined $model_prop and $self_prop ne $model_prop
|
|
690
|
0 |
34 |
if ($s_lookup and not $m_lookup)
|
|
695
|
0 |
0 |
unless ($s_lookup or $m_lookup)
|
|
704
|
0 |
34 |
if (scalar @s_keys != scalar @m_keys)
|
|
710
|
0 |
448 |
if (not exists $m_lookup->{$key}) { }
|
|
722
|
0 |
448 |
if (scalar @m_vals != scalar @s_vals)
|
|
730
|
0 |
808 |
unless exists $m_vals{$val}
|
|
814
|
0 |
0 |
if (my $lookup = $self->get_lookup)
|
|
831
|
0 |
0 |
if (%{$special;})
|
|
867
|
0 |
0 |
exists $normalized->{$state} ? :
|
|
870
|
0 |
0 |
$polymorphism ? :
|
|
|
0 |
0 |
$unambiguous ? :
|
|
881
|
0 |
0 |
if ($unambiguous) { }
|
|
918
|
0 |
0 |
if (&looks_like_instance($dom, 'SCALAR') and $dom->_type == 18) { }
|
|
925
|
0 |
0 |
unless ($dom)
|
|
932
|
0 |
0 |
if (my $lookup = $self->get_lookup)
|
|
958
|
0 |
0 |
if (%{$special;})
|
|
990
|
0 |
0 |
exists $normalized->{$state} ? :
|
|
994
|
0 |
0 |
if (scalar @mapping > 1) { }
|
|
995
|
0 |
0 |
$polymorphism ? :
|