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package Bio::Phylo::Matrices::Datatype::Sanger; |
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use strict; |
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use warnings; |
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use base 'Bio::Phylo::Matrices::Datatype'; |
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our ( $LOOKUP, $MISSING, $GAP ); |
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=head1 NAME |
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Bio::Phylo::Matrices::Datatype::Sanger - Validator subclass, |
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no serviceable parts inside |
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=head1 DESCRIPTION |
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The Bio::Phylo::Matrices::Datatype::* classes are used to validate data |
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contained by L<Bio::Phylo::Matrices::Matrix> and L<Bio::Phylo::Matrices::Datum> |
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objects. |
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=cut |
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# podinherit_insert_token |
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=head1 SEE ALSO |
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There is a mailing list at L<https://groups.google.com/forum/#!forum/bio-phylo> |
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for any user or developer questions and discussions. |
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=over |
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=item L<Bio::Phylo::Matrices::Datatype> |
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This class subclasses L<Bio::Phylo::Matrices::Datatype>. |
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=item L<Bio::Phylo::Manual> |
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Also see the manual: L<Bio::Phylo::Manual> and L<http://rutgervos.blogspot.com>. |
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=back |
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=head1 CITATION |
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If you use Bio::Phylo in published research, please cite it: |
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B<Rutger A Vos>, B<Jason Caravas>, B<Klaas Hartmann>, B<Mark A Jensen> |
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and B<Chase Miller>, 2011. Bio::Phylo - phyloinformatic analysis using Perl. |
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I<BMC Bioinformatics> B<12>:63. |
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L<http://dx.doi.org/10.1186/1471-2105-12-63> |
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=cut |
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$LOOKUP = { map { chr($_) => [ $_ - 33 ] } 33 .. 126 }; |
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$MISSING = '?'; |
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$GAP = '-'; |
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1; |