Subroutine Coverage
| blib/lib/Bio/Phylo/Models/Substitution/Dna.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
22 |
38 |
57.8
|
| pod |
24 |
24 |
100.0
|
| line |
count |
pod |
subroutine |
|
2
|
14 |
n/a |
BEGIN |
|
3
|
14 |
n/a |
BEGIN |
|
4
|
14 |
n/a |
BEGIN |
|
5
|
14 |
n/a |
BEGIN |
|
6
|
14 |
n/a |
BEGIN |
|
8
|
14 |
n/a |
BEGIN |
|
9
|
14 |
n/a |
BEGIN |
|
11
|
0 |
n/a |
_INDEX_OF_ |
|
12
|
0 |
n/a |
_BASE_AT_ |
|
86
|
1 |
Yes |
new |
|
113
|
0 |
Yes |
get_catrates |
|
129
|
0 |
Yes |
get_nst |
|
148
|
0 |
Yes |
get_rate |
|
177
|
0 |
Yes |
get_nstates |
|
194
|
2 |
Yes |
get_ncat |
|
209
|
0 |
Yes |
get_catweights |
|
224
|
1 |
Yes |
get_kappa |
|
239
|
2 |
Yes |
get_alpha |
|
254
|
0 |
Yes |
get_mu |
|
269
|
2 |
Yes |
get_pinvar |
|
286
|
0 |
Yes |
get_pi |
|
310
|
1 |
Yes |
get_median |
|
326
|
1 |
Yes |
set_rate |
|
350
|
1 |
Yes |
set_ncat |
|
369
|
0 |
Yes |
set_catweights |
|
388
|
1 |
Yes |
set_kappa |
|
407
|
1 |
Yes |
set_alpha |
|
426
|
0 |
Yes |
set_mu |
|
445
|
1 |
Yes |
set_pinvar |
|
469
|
1 |
Yes |
set_pi |
|
493
|
1 |
Yes |
set_median |
|
520
|
0 |
Yes |
modeltest |
|
690
|
1 |
Yes |
to_string |
|
707
|
1 |
n/a |
_to_garli_string |
|
723
|
0 |
n/a |
_to_mrbayes_string |
|
775
|
0 |
n/a |
_to_phyml_string |
|
808
|
0 |
n/a |
_to_paup_string |
|
843
|
0 |
n/a |
_type |