Subroutine Coverage
| blib/lib/Bio/Phylo/Forest/NodeRole.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
70 |
101 |
69.3
|
| pod |
58 |
77 |
75.3
|
| line |
count |
pod |
subroutine |
|
2
|
34 |
n/a |
BEGIN |
|
3
|
34 |
n/a |
BEGIN |
|
4
|
34 |
n/a |
BEGIN |
|
5
|
34 |
n/a |
BEGIN |
|
6
|
34 |
n/a |
BEGIN |
|
7
|
34 |
n/a |
BEGIN |
|
8
|
34 |
n/a |
BEGIN |
|
9
|
34 |
n/a |
BEGIN |
|
10
|
34 |
n/a |
BEGIN |
|
11
|
34 |
n/a |
BEGIN |
|
12
|
34 |
n/a |
BEGIN |
|
13
|
34 |
n/a |
BEGIN |
|
14
|
34 |
n/a |
BEGIN |
|
113
|
9575 |
Yes |
new |
|
137
|
0 |
No |
add_Descendent |
|
137
|
0 |
No |
add_tag_value |
|
137
|
0 |
No |
ancestor |
|
137
|
0 |
No |
bootstrap |
|
137
|
0 |
No |
branch_length |
|
137
|
0 |
No |
depth |
|
137
|
0 |
No |
descendent_count |
|
137
|
0 |
No |
description |
|
137
|
0 |
No |
each_Descendent |
|
137
|
0 |
No |
get_all_Descendents |
|
137
|
0 |
No |
get_all_tags |
|
137
|
0 |
No |
get_tag_values |
|
137
|
0 |
No |
has_tag |
|
137
|
0 |
No |
height |
|
137
|
0 |
No |
id |
|
137
|
0 |
No |
id_output |
|
137
|
0 |
No |
internal_id |
|
137
|
0 |
No |
invalidate_height |
|
137
|
0 |
No |
remove_all_tags |
|
137
|
0 |
n/a |
remove_tag |
|
141
|
34 |
n/a |
BEGIN |
|
171
|
0 |
Yes |
new_from_bioperl |
|
213
|
346 |
Yes |
prune_child |
|
236
|
110 |
Yes |
collapse |
|
289
|
336 |
Yes |
set_first_daughter |
|
311
|
336 |
Yes |
set_last_daughter |
|
333
|
237 |
Yes |
set_previous_sister |
|
369
|
237 |
Yes |
set_next_sister |
|
401
|
0 |
Yes |
set_node_below |
|
442
|
9 |
Yes |
set_root_below |
|
545
|
50971 |
Yes |
get_first_daughter |
|
562
|
22 |
Yes |
get_last_daughter |
|
579
|
230 |
Yes |
get_previous_sister |
|
606
|
8131 |
Yes |
get_next_sister |
|
635
|
71 |
Yes |
get_ancestors |
|
664
|
3 |
Yes |
get_root |
|
689
|
3 |
Yes |
get_farthest_node |
|
725
|
2 |
Yes |
get_sisters |
|
749
|
50998 |
Yes |
get_child |
|
772
|
595 |
Yes |
get_descendants |
|
805
|
8815 |
n/a |
_desc |
|
833
|
585 |
Yes |
get_terminals |
|
858
|
1 |
Yes |
get_internals |
|
887
|
40 |
Yes |
get_mrca |
|
920
|
4 |
Yes |
get_leftmost_terminal |
|
950
|
4 |
Yes |
get_rightmost_terminal |
|
978
|
0 |
Yes |
get_subtree |
|
982
|
0 |
n/a |
__ANON__ |
|
996
|
0 |
n/a |
__ANON__ |
|
1028
|
1904 |
Yes |
get_subtrees |
|
1099
|
39618 |
Yes |
is_terminal |
|
1119
|
147 |
Yes |
is_internal |
|
1138
|
9 |
Yes |
is_preterminal |
|
1163
|
0 |
Yes |
is_first |
|
1183
|
0 |
Yes |
is_last |
|
1202
|
558 |
Yes |
is_root |
|
1223
|
9612 |
Yes |
is_descendant_of |
|
1256
|
9611 |
Yes |
is_ancestor_of |
|
1283
|
4 |
Yes |
is_sister_of |
|
1315
|
9917 |
Yes |
is_child_of |
|
1343
|
2 |
Yes |
is_outgroup_of |
|
1375
|
19739 |
Yes |
can_contain |
|
1405
|
81 |
Yes |
calc_path_to_root |
|
1439
|
2 |
Yes |
calc_nodes_to_root |
|
1470
|
1 |
Yes |
calc_max_nodes_to_tips |
|
1502
|
2 |
Yes |
calc_min_nodes_to_tips |
|
1534
|
2 |
Yes |
calc_max_path_to_tips |
|
1569
|
2 |
Yes |
calc_min_path_to_tips |
|
1607
|
19 |
Yes |
calc_patristic_distance |
|
1644
|
9 |
Yes |
calc_nodal_distance |
|
1673
|
236 |
Yes |
calc_terminals |
|
1675
|
1172 |
n/a |
__ANON__ |
|
1697
|
358 |
Yes |
calc_rankprob_tipcounts |
|
1760
|
76 |
Yes |
calc_rankprob |
|
1816
|
8 |
Yes |
calc_expected_rank |
|
1846
|
56 |
Yes |
calc_rankprob_compare |
|
1957
|
141 |
Yes |
visit_depth_first |
|
1985
|
4466 |
n/a |
_visit_depth_first |
|
2060
|
0 |
Yes |
visit_breadth_first |
|
2075
|
0 |
n/a |
_visit_breadth_first |
|
2114
|
360 |
Yes |
visit_level_order |
|
2151
|
0 |
Yes |
to_xml |
|
2215
|
3364 |
Yes |
to_newick |
|
2337
|
0 |
Yes |
to_dom |
|
2404
|
60086 |
n/a |
_type |
|
2405
|
2 |
n/a |
_tag |
|
2420
|
19487 |
n/a |
_container |