Coverage Summary

Module BioPerl-Run
Version 1.007001
Database: /root/.cpan/build/BioPerl-Run-1.007001-mQo3B4/cover_db
Report date: 2016-12-19 05:46:56
Perl version: v5.22.0
OS: linux
Thresholds: < 75% < 90% < 100% = 100%

Restrict to regex:

file stmt bran cond sub pod time total
Total 32.4 12.5 7.9 62.5 93.2 100.0 30.1
_build/lib/MyModuleBuilder.pm 21.4 0.0 n/a 50.0 0.0 3.3 17.3
blib/lib/Bio/DB/ESoap.pm 83.3 n/a n/a 100.0 n/a 1.5 87.5
blib/lib/Bio/DB/ESoap/WSDL.pm 77.7 n/a n/a 100.0 n/a 0.0 83.3
blib/lib/Bio/Tools/Run/Alignment/Amap.pm 33.5 7.6 0.0 68.1 100.0 1.2 31.5
blib/lib/Bio/Tools/Run/Alignment/Blat.pm 31.2 14.0 11.7 45.1 100.0 0.9 31.8
blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm 13.7 0.0 0.0 50.0 100.0 1.4 13.5
blib/lib/Bio/Tools/Run/Alignment/DBA.pm 22.8 8.9 0.0 65.2 100.0 1.3 23.5
blib/lib/Bio/Tools/Run/Alignment/Exonerate.pm 34.3 15.3 0.0 58.8 100.0 0.8 35.6
blib/lib/Bio/Tools/Run/Alignment/Gmap.pm 36.8 8.3 0.0 56.2 100.0 1.0 36.7
blib/lib/Bio/Tools/Run/Alignment/Kalign.pm 36.4 8.9 6.2 69.5 100.0 1.3 33.5
blib/lib/Bio/Tools/Run/Alignment/Lagan.pm 28.2 10.6 11.4 63.6 100.0 1.3 25.8
blib/lib/Bio/Tools/Run/Alignment/MAFFT.pm 42.1 26.0 15.3 69.5 100.0 1.4 39.3
blib/lib/Bio/Tools/Run/Alignment/MSAProbs.pm 28.4 4.6 0.0 62.5 100.0 1.3 26.1
blib/lib/Bio/Tools/Run/Alignment/Muscle.pm 20.9 4.8 10.5 57.8 100.0 1.1 20.6
blib/lib/Bio/Tools/Run/Alignment/Pal2Nal.pm 25.0 0.0 0.0 70.0 100.0 1.2 25.4
blib/lib/Bio/Tools/Run/Alignment/Probalign.pm 32.6 3.8 7.6 65.2 100.0 1.2 30.4
blib/lib/Bio/Tools/Run/Alignment/Probcons.pm 31.4 3.4 7.6 65.2 100.0 1.2 29.0
blib/lib/Bio/Tools/Run/Alignment/Sim4.pm 40.3 13.0 0.0 73.6 100.0 1.2 37.0
blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm 31.8 13.5 18.5 66.6 100.0 1.0 29.3
blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm 24.6 11.7 0.0 64.0 100.0 1.2 23.2
blib/lib/Bio/Tools/Run/AssemblerBase.pm 47.8 30.9 20.5 59.2 100.0 2.1 43.2
blib/lib/Bio/Tools/Run/BEDTools.pm 92.8 n/a n/a 100.0 n/a 1.1 94.7
blib/lib/Bio/Tools/Run/BEDTools/Config.pm 100.0 n/a n/a 100.0 n/a 0.1 100.0
blib/lib/Bio/Tools/Run/BWA.pm 14.7 0.0 0.0 43.4 75.0 0.8 13.5
blib/lib/Bio/Tools/Run/BWA/Config.pm 87.5 n/a n/a 100.0 n/a 0.0 89.7
blib/lib/Bio/Tools/Run/BlastPlus.pm 60.8 0.0 33.3 75.0 100.0 0.0 53.9
blib/lib/Bio/Tools/Run/BlastPlus/Config.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Tools/Run/Bowtie.pm 24.1 8.3 0.0 62.9 75.0 1.0 17.3
blib/lib/Bio/Tools/Run/Bowtie/Config.pm 100.0 n/a n/a 100.0 n/a 0.1 100.0
blib/lib/Bio/Tools/Run/Cap3.pm 37.7 8.3 0.0 80.0 100.0 0.6 32.3
blib/lib/Bio/Tools/Run/Coil.pm 34.8 3.8 0.0 64.7 100.0 1.1 33.5
blib/lib/Bio/Tools/Run/Eponine.pm 18.9 4.0 3.3 41.1 100.0 1.2 16.7
blib/lib/Bio/Tools/Run/FootPrinter.pm 34.7 11.6 7.6 76.4 100.0 1.1 31.7
blib/lib/Bio/Tools/Run/Genemark.pm 32.1 0.0 0.0 56.2 100.0 1.3 29.6
blib/lib/Bio/Tools/Run/Genewise.pm 36.9 9.6 0.0 65.3 85.7 1.1 33.8
blib/lib/Bio/Tools/Run/Genscan.pm 37.5 0.0 n/a 52.6 100.0 1.2 38.1
blib/lib/Bio/Tools/Run/Glimmer.pm 40.5 17.6 n/a 76.4 100.0 2.8 41.3
blib/lib/Bio/Tools/Run/Hmmer.pm 18.2 5.8 5.0 40.0 100.0 1.2 18.0
blib/lib/Bio/Tools/Run/Infernal.pm 20.0 9.5 5.1 40.6 100.0 1.3 18.9
blib/lib/Bio/Tools/Run/MCS.pm 86.6 n/a n/a 100.0 n/a 1.2 90.0
blib/lib/Bio/Tools/Run/Maq.pm 23.0 8.7 0.0 50.0 75.0 1.1 20.8
blib/lib/Bio/Tools/Run/Maq/Config.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Tools/Run/Match.pm 86.6 n/a n/a 100.0 n/a 0.9 90.0
blib/lib/Bio/Tools/Run/Mdust.pm 49.5 25.0 37.5 73.6 100.0 1.3 45.3
blib/lib/Bio/Tools/Run/Meme.pm 25.0 0.0 0.0 64.2 100.0 1.2 23.9
blib/lib/Bio/Tools/Run/Minimo.pm 35.6 7.1 0.0 77.7 100.0 0.7 35.0
blib/lib/Bio/Tools/Run/Newbler.pm 43.0 22.7 0.0 90.0 100.0 0.7 41.6
blib/lib/Bio/Tools/Run/Phrap.pm 37.5 8.3 0.0 80.0 100.0 0.6 32.8
blib/lib/Bio/Tools/Run/Phylo/FastTree.pm 28.1 0.0 5.8 58.8 100.0 1.8 26.5
blib/lib/Bio/Tools/Run/Phylo/Gerp.pm 44.1 8.3 8.3 80.0 100.0 1.2 40.1
blib/lib/Bio/Tools/Run/Phylo/Gumby.pm 90.4 n/a n/a 100.0 n/a 1.2 92.8
blib/lib/Bio/Tools/Run/Phylo/Hyphy/Base.pm 15.4 9.3 5.5 41.6 100.0 0.0 18.5
blib/lib/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm 21.8 0.0 n/a 43.7 100.0 0.0 23.2
blib/lib/Bio/Tools/Run/Phylo/Hyphy/FEL.pm 36.8 0.0 n/a 63.6 100.0 0.0 35.5
blib/lib/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm 40.6 0.0 n/a 66.6 100.0 0.0 37.1
blib/lib/Bio/Tools/Run/Phylo/Hyphy/REL.pm 57.1 31.2 n/a 81.8 100.0 0.0 57.4
blib/lib/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm 36.8 0.0 n/a 63.6 100.0 1.2 35.5
blib/lib/Bio/Tools/Run/Phylo/LVB.pm 41.4 5.2 0.0 75.0 100.0 1.3 38.2
blib/lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm 41.5 23.5 13.3 68.4 100.0 1.3 38.2
blib/lib/Bio/Tools/Run/Phylo/Njtree/Best.pm 22.9 8.1 0.0 59.0 100.0 1.2 22.7
blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm 37.5 20.2 12.5 65.2 100.0 1.3 34.6
blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm 22.4 4.1 0.0 50.0 100.0 0.0 22.0
blib/lib/Bio/Tools/Run/Phylo/Phast/PhastCons.pm 90.4 n/a n/a 100.0 n/a 1.2 92.8
blib/lib/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm 29.5 0.0 0.0 50.0 100.0 0.1 29.7
blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm 63.8 25.0 7.1 66.6 100.0 0.2 50.6
blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm 23.7 3.5 0.0 60.0 100.0 1.2 23.2
blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm 35.2 20.3 0.0 66.6 100.0 0.6 34.6
blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm 35.3 20.6 0.0 66.6 100.0 0.6 34.2
blib/lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm 37.5 13.2 0.0 69.5 100.0 0.0 33.5
blib/lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm 36.2 11.1 0.0 71.4 100.0 2.4 31.4
blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm 49.1 20.5 0.0 76.1 100.0 1.2 47.8
blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm 42.6 17.3 0.0 78.9 100.0 1.2 40.4
blib/lib/Bio/Tools/Run/Phylo/PhyloBase.pm 13.9 0.0 0.0 36.3 n/a 0.1 10.1
blib/lib/Bio/Tools/Run/Phylo/Phyml.pm 31.8 23.0 24.0 44.4 100.0 1.2 31.1
blib/lib/Bio/Tools/Run/Phylo/QuickTree.pm 29.8 9.3 0.0 50.0 100.0 1.2 28.3
blib/lib/Bio/Tools/Run/Phylo/Raxml.pm 36.2 5.5 5.8 66.6 100.0 1.3 33.5
blib/lib/Bio/Tools/Run/Phylo/SLR.pm 25.8 13.4 4.1 62.5 100.0 1.2 25.9
blib/lib/Bio/Tools/Run/Phylo/Semphy.pm 35.9 0.0 0.0 72.7 100.0 1.3 33.9
blib/lib/Bio/Tools/Run/Primate.pm 30.1 11.1 0.0 59.0 100.0 1.1 27.7
blib/lib/Bio/Tools/Run/Primer3.pm 28.2 12.5 0.0 64.7 100.0 1.1 26.2
blib/lib/Bio/Tools/Run/Prints.pm 50.0 22.7 n/a 72.2 100.0 1.1 50.3
blib/lib/Bio/Tools/Run/Profile.pm 49.4 20.0 n/a 72.2 100.0 1.1 50.0
blib/lib/Bio/Tools/Run/Promoterwise.pm 34.1 13.1 0.0 61.1 100.0 1.1 31.7
blib/lib/Bio/Tools/Run/Pseudowise.pm 29.4 15.0 0.0 50.0 100.0 1.2 28.3
blib/lib/Bio/Tools/Run/RepeatMasker.pm 38.6 15.6 0.0 60.0 100.0 1.1 38.3
blib/lib/Bio/Tools/Run/Samtools.pm 95.6 n/a 33.3 87.5 100.0 1.0 88.8
blib/lib/Bio/Tools/Run/Samtools/Config.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Tools/Run/Seg.pm 36.0 5.0 n/a 64.7 100.0 1.1 37.5
blib/lib/Bio/Tools/Run/Signalp.pm 35.4 4.1 n/a 66.6 100.0 1.1 36.3
blib/lib/Bio/Tools/Run/Simprot.pm 32.4 15.6 3.4 65.2 91.6 1.2 30.8
blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm 6.4 0.0 0.0 20.4 40.6 0.0 6.5
blib/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm 21.8 0.0 0.0 57.1 0.0 0.0 17.1
blib/lib/Bio/Tools/Run/TigrAssembler.pm 26.1 10.0 0.0 66.6 100.0 0.8 25.2
blib/lib/Bio/Tools/Run/Tmhmm.pm 40.1 10.7 16.6 70.0 100.0 1.1 40.4
blib/lib/Bio/Tools/Run/TribeMCL.pm 15.6 7.4 6.8 50.0 80.0 1.1 15.0
blib/lib/Bio/Tools/Run/Vista.pm 11.9 2.0 2.3 38.1 100.0 0.9 10.7
blib/lib/Bio/Tools/Run/WrapperBase.pm 77.6 58.1 51.2 76.1 100.0 1.9 69.0
blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm 52.8 35.1 30.4 65.6 52.9 0.4 46.3
blib/lib/Bio/Tools/Run/tRNAscanSE.pm 51.3 18.7 n/a 75.0 100.0 1.4 51.7