| line |
!l |
l&&!r |
l&&r |
condition |
|
219
|
0 |
0 |
0 |
defined $self->{'no_param_checks'} and $self->{'no_param_checks'} == 1 |
|
224
|
0 |
0 |
0 |
ref($Bio::Tools::Run::Simprot::VALIDVALUES{$param}) =~ /ARRAY/i and scalar @{$Bio::Tools::Run::Simprot::VALIDVALUES{$param};} > 0 |
|
258
|
11 |
0 |
0 |
defined $self->{'_simprotparams'}{$param} and $keepold |
|
314
|
0 |
0 |
0 |
not ref $tree and -e $tree |
|
377
|
0 |
0 |
0 |
$simprot_executable and -e $simprot_executable |
|
|
0 |
0 |
0 |
$simprot_executable and -e $simprot_executable and -x _ |
|
465
|
0 |
0 |
0 |
ref $aln && $aln->isa('Bio::Align::AlignI') |
|
495
|
0 |
0 |
0 |
ref $tree and $tree->isa('Bio::Tree::TreeI') |