| blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 0 | 35 | 0.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 542 | 0 | 0 | 0 | $infilename1 and $infilename2 |
| 543 | 0 | 0 | 0 | -e $infilename1 and -e $infilename2 |
| 577 | 0 | 0 | 0 | $infilename1 and $infilename2 |
| 578 | 0 | 0 | 0 | -e $infilename1 and -e $infilename2 |
| 855 | 0 | 0 | 0 | ref $input and $input->isa('Bio::PrimarySeqI') |
| 0 | 0 | 0 | ref $input and $input->isa('Bio::PrimarySeqI') and $suffix == 2 | |
| 864 | 0 | 0 | 0 | defined $seq and $seq->isa('Bio::PrimarySeqI') |
| 0 | 0 | 0 | defined $seq and $seq->isa('Bio::PrimarySeqI') and $seq->id |
| line | l | !l | condition |
|---|---|---|---|
| 445 | 0 | 0 | $1 || undef |
| 651 | 0 | 0 | $slice_size ||= 5 |
| 652 | 0 | 0 | $deviate ||= 33 |
| 752 | 0 | 0 | $self->output || 'gcg' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 702 | 0 | 0 | 0 | $self->quiet || $self->verbose < 0 |