| blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 5 | 27 | 18.5 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 203 | 1 | 0 | 0 | defined $exe and -x $exe |
| 208 | 1 | 0 | 0 | -e $f and -x $f |
| 214 | 1 | 0 | 0 | $exe = $self->io->exists_exe($exename) and -x $exe |
| 489 | 0 | 0 | 0 | ref $_ and $_->isa('Bio::PrimarySeqI') |
| 526 | 0 | 0 | 0 | ($f = 'Bio::Root::IO'->exists_exe($exe)) && -x $f |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 156 | 1 | 0 | 5 | $attr =~ /^-/ or not $attr |
| 266 | 0 | 0 | 0 | $self->executable($self->program_name) || $self->throw("FASTA program not found or not executable.\n") |
| 282 | 0 | 0 | 0 | !defined($onefile) || $onefile =~ /^0$/ |
| 400 | 0 | 0 | 0 | $lb =~ /^%[a-zA-Z]+$/ or $lb =~ /^[a-zA-Z]$/ |