| line |
true |
false |
branch |
|
201
|
0 |
4 |
if $ENV{'AMAPDIR'} |
|
219
|
0 |
1 |
if $on |
|
226
|
0 |
0 |
if $attr =~ /^-/ |
|
238
|
0 |
0 |
unless $Bio::Tools::Run::Alignment::Amap::OK_FIELD{$attr} |
|
240
|
0 |
0 |
if @_ |
|
258
|
0 |
0 |
unless $exe = $self->executable |
|
310
|
0 |
0 |
unless ($infilename) |
|
343
|
0 |
0 |
if (not -e $outfile or -z $outfile) |
|
370
|
0 |
0 |
if (not ref $input) { } |
|
|
0 |
0 |
elsif (ref($input) =~ /ARRAY/i) { } |
|
373
|
0 |
0 |
unless (-e $input) |
|
375
|
0 |
0 |
unless open IN, $infilename |
|
378
|
0 |
0 |
unless $header =~ /^\s+$/ |
|
381
|
0 |
0 |
unless ($header =~ /^>\s*\S+/) |
|
389
|
0 |
0 |
if (not ref $input->[0]) { } |
|
|
0 |
0 |
elsif ($input->[0]->isa('Bio::PrimarySeqI')) { } |
|
397
|
0 |
0 |
unless ref $seq and $seq->isa('Bio::PrimarySeqI') |
|
399
|
0 |
0 |
if (not defined $seq->display_id or $seq->display_id =~ /^\s+$/) |
|
441
|
0 |
0 |
unless defined $value |
|
443
|
0 |
0 |
unless $attr eq 'ANNOT' |
|
444
|
0 |
0 |
if $attr eq 'ANNOT' |
|
450
|
0 |
0 |
unless $value |
|
456
|
0 |
0 |
unless ($self->outfile_name) |
|
465
|
0 |
0 |
if ($self->verbose < 0) |
|
466
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
485
|
1 |
1 |
if @_ |