Condition Coverage

blib/lib/Bio/Tools/Run/TribeMCL.pm
Criterion Covered Total %
condition 3 44 6.8


and 3 conditions

line !l l&&!r l&&r condition
279 0 0 0 $Bio::Tools::Run::TribeMCL::MCLPROGRAM and -e $Bio::Tools::Run::TribeMCL::MCLPROGRAM
0 0 0 $Bio::Tools::Run::TribeMCL::MCLPROGRAM and -e $Bio::Tools::Run::TribeMCL::MCLPROGRAM and -x $Bio::Tools::Run::TribeMCL::MCLPROGRAM
283 0 0 0 $exe = $self->io->exists_exe($Bio::Tools::Run::TribeMCL::MCLPROGRAM_NAME) and -x $exe
314 1 0 0 $Bio::Tools::Run::TribeMCL::MATRIXPROGRAM and -e $Bio::Tools::Run::TribeMCL::MATRIXPROGRAM
1 0 0 $Bio::Tools::Run::TribeMCL::MATRIXPROGRAM and -e $Bio::Tools::Run::TribeMCL::MATRIXPROGRAM and -x $Bio::Tools::Run::TribeMCL::MATRIXPROGRAM
318 1 0 0 $exe = $self->io->exists_exe($Bio::Tools::Run::TribeMCL::MATRIXPROGRAM_NAME) and -x $exe
558 0 0 0 $perc_with_desc >= 40 and $length >= 1

or 2 conditions

line l !l condition
208 0 0 $ENV{'TRIBEDIR'} || ''
370 0 0 $self->family_tag || 'TribeFamily'
479 0 0 $consensus{$i}{'desc'} || 'UNKNOWN'
936 0 0 $cluster[$i] || ''

or 3 conditions

line l !l&&r !l&&!r condition
539 0 0 0 $lcs eq $candidate_consensus or index($orig_desc, $candidate_consensus) != -1
566 0 0 0 $best_perc == 0 or $best_perc >= 100
641 0 0 0 $self->mcl_executable || $self->throw('mcl not found.')
659 0 0 0 $self->quiet or $self->verbose < 0
687 0 0 0 $self->matrix_executable || $self->throw('tribe-matrix not found.')