Coverage Summary

Module Bio-Phylo
Version v0.58_2
Database: /root/.cpan/build/Bio-Phylo-v0.58_2-0/cover_db
Report date: 2017-10-15 19:04:01
Perl version: v5.26.1
OS: linux
Thresholds: < 75% < 90% < 100% = 100%

Restrict to regex:

file stmt bran cond sub pod time total
Total 58.6 43.0 42.3 72.5 79.6 100.0 56.2
blib/lib/Bio/Phylo.pm 85.5 56.5 47.6 94.7 100.0 4.8 78.9
blib/lib/Bio/Phylo/EvolutionaryModels.pm 48.4 36.0 25.8 73.9 61.9 0.8 44.5
blib/lib/Bio/Phylo/Factory.pm 48.2 22.7 n/a 66.6 100.0 0.9 45.5
blib/lib/Bio/Phylo/Forest.pm 63.3 40.2 30.0 73.6 100.0 0.0 58.2
blib/lib/Bio/Phylo/Forest/DrawNodeRole.pm 81.4 57.1 n/a 87.5 100.0 7.4 77.9
blib/lib/Bio/Phylo/Forest/DrawTreeRole.pm 57.9 50.0 n/a 83.3 100.0 0.2 59.5
blib/lib/Bio/Phylo/Forest/Node.pm 84.9 68.7 66.6 96.0 100.0 3.6 82.4
blib/lib/Bio/Phylo/Forest/NodeRole.pm 73.4 59.0 66.9 69.0 75.3 4.4 69.5
blib/lib/Bio/Phylo/Forest/Tree.pm 87.0 50.0 n/a 93.7 100.0 0.2 83.9
blib/lib/Bio/Phylo/Forest/TreeRole.pm 45.0 38.1 41.8 53.7 83.7 2.1 45.8
blib/lib/Bio/Phylo/Generator.pm 100.0 100.0 48.1 100.0 100.0 0.0 93.9
blib/lib/Bio/Phylo/IO.pm 67.5 66.6 71.4 76.9 100.0 3.0 70.0
blib/lib/Bio/Phylo/Identifiable.pm 86.3 50.0 n/a 85.7 100.0 21.7 85.2
blib/lib/Bio/Phylo/Listable.pm 74.1 48.4 60.7 82.0 100.0 2.4 70.9
blib/lib/Bio/Phylo/ListableRole.pm 67.0 63.7 78.5 83.3 100.0 4.8 69.7
blib/lib/Bio/Phylo/Matrices.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Character.pm 67.3 16.6 0.0 93.7 100.0 0.0 59.5
blib/lib/Bio/Phylo/Matrices/Characters.pm 65.2 n/a n/a 77.7 100.0 0.0 69.7
blib/lib/Bio/Phylo/Matrices/Datatype.pm 44.4 34.9 20.0 77.2 100.0 3.1 45.7
blib/lib/Bio/Phylo/Matrices/Datatype/Continuous.pm 88.2 83.3 66.6 87.5 100.0 0.0 87.5
blib/lib/Bio/Phylo/Matrices/Datatype/Dna.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Protein.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Rna.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Sanger.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datatype/Standard.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Matrices/Datum.pm 62.9 40.0 41.1 84.2 100.0 1.9 59.9
blib/lib/Bio/Phylo/Matrices/DatumRole.pm 29.5 18.1 3.7 37.1 43.7 0.2 26.0
blib/lib/Bio/Phylo/Matrices/Matrix.pm 87.5 45.4 37.5 100.0 100.0 0.2 81.5
blib/lib/Bio/Phylo/Matrices/MatrixRole.pm 30.1 19.8 10.8 36.7 41.2 0.2 27.6
blib/lib/Bio/Phylo/Matrices/TypeSafeData.pm 88.4 69.2 47.6 90.4 100.0 0.1 81.7
blib/lib/Bio/Phylo/Mediators/TaxaMediator.pm 90.2 79.4 85.7 90.9 100.0 0.8 87.6
blib/lib/Bio/Phylo/Models/Substitution/Binary.pm 20.5 0.0 0.0 41.6 100.0 0.0 24.0
blib/lib/Bio/Phylo/Models/Substitution/Dna.pm 30.7 12.9 2.3 56.7 100.0 0.3 29.7
blib/lib/Bio/Phylo/Models/Substitution/Dna/GTR.pm 100.0 n/a n/a 100.0 100.0 0.0 100.0
blib/lib/Bio/Phylo/NeXML/DOM.pm 42.8 0.0 0.0 37.5 100.0 0.0 41.5
blib/lib/Bio/Phylo/NeXML/Entities.pm 12.5 0.0 0.0 50.0 100.0 0.1 11.1
blib/lib/Bio/Phylo/NeXML/Meta.pm 66.6 20.0 33.3 71.4 100.0 0.2 64.6
blib/lib/Bio/Phylo/NeXML/Writable.pm 62.4 45.0 35.2 79.2 100.0 6.2 60.9
blib/lib/Bio/Phylo/Parsers/Abstract.pm 65.8 55.0 25.0 88.8 n/a 0.9 63.5
blib/lib/Bio/Phylo/Parsers/Adjacency.pm 98.2 72.2 n/a 100.0 n/a 0.0 92.5
blib/lib/Bio/Phylo/Parsers/Fastq.pm 100.0 63.6 75.0 100.0 n/a 1.5 89.1
blib/lib/Bio/Phylo/Parsers/Figtree.pm 96.5 80.0 88.8 100.0 n/a 0.0 93.6
blib/lib/Bio/Phylo/Parsers/Newick.pm 96.2 91.2 83.5 92.8 n/a 9.0 91.2
blib/lib/Bio/Phylo/Parsers/Nexus.pm 82.4 69.1 58.4 84.9 n/a 0.2 75.5
blib/lib/Bio/Phylo/Parsers/Nhx.pm 95.0 66.6 33.3 100.0 n/a 0.0 87.3
blib/lib/Bio/Phylo/Parsers/Phylip.pm 93.1 62.5 62.5 100.0 n/a 0.0 83.6
blib/lib/Bio/Phylo/Parsers/Table.pm 100.0 n/a 100.0 100.0 n/a 0.1 100.0
blib/lib/Bio/Phylo/Parsers/Taxlist.pm 72.2 12.5 75.0 100.0 n/a 0.0 65.3
blib/lib/Bio/Phylo/Project.pm 33.3 20.0 0.0 58.3 100.0 0.0 37.0
blib/lib/Bio/Phylo/Set.pm 87.5 50.0 n/a 71.4 100.0 0.0 80.7
blib/lib/Bio/Phylo/Taxa.pm 47.2 13.6 57.1 60.0 100.0 0.0 48.2
blib/lib/Bio/Phylo/Taxa/TaxaLinker.pm 76.9 50.0 66.6 75.0 100.0 0.0 76.1
blib/lib/Bio/Phylo/Taxa/Taxon.pm 80.8 66.6 50.0 86.6 100.0 0.1 79.7
blib/lib/Bio/Phylo/Taxa/TaxonLinker.pm 87.8 100.0 100.0 90.0 100.0 0.0 90.2
blib/lib/Bio/Phylo/Treedrawer.pm 61.4 44.1 30.9 76.6 92.6 0.0 59.6
blib/lib/Bio/Phylo/Treedrawer/Abstract.pm 37.6 32.9 28.5 44.4 n/a 0.0 36.5
blib/lib/Bio/Phylo/Treedrawer/Processing.pm 63.1 35.7 10.0 76.4 n/a 0.0 56.3
blib/lib/Bio/Phylo/Treedrawer/Svg.pm 47.8 34.2 14.8 80.0 n/a 0.0 41.7
blib/lib/Bio/Phylo/Unparsers/Abstract.pm 95.4 75.0 n/a 80.0 n/a 0.0 90.3
blib/lib/Bio/Phylo/Unparsers/Adjacency.pm 91.8 42.8 n/a 100.0 n/a 0.0 82.8
blib/lib/Bio/Phylo/Unparsers/Figtree.pm 95.8 60.0 n/a 100.0 n/a 0.0 90.9
blib/lib/Bio/Phylo/Unparsers/Hennig86.pm 92.1 50.0 33.3 100.0 n/a 0.0 85.7
blib/lib/Bio/Phylo/Unparsers/Newick.pm 33.8 11.5 n/a 83.3 n/a 0.0 31.0
blib/lib/Bio/Phylo/Unparsers/Nexus.pm 42.8 25.0 33.3 100.0 n/a 0.0 38.7
blib/lib/Bio/Phylo/Unparsers/Nhx.pm 75.6 30.0 n/a 77.7 n/a 0.0 68.3
blib/lib/Bio/Phylo/Unparsers/Pagel.pm 84.3 83.3 n/a 100.0 n/a 0.0 85.7
blib/lib/Bio/Phylo/Util/CONSTANT.pm 100.0 100.0 100.0 100.0 100.0 2.1 100.0
blib/lib/Bio/Phylo/Util/CONSTANT/Int.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
blib/lib/Bio/Phylo/Util/Dependency.pm 93.3 n/a n/a 83.3 n/a 0.0 90.4
blib/lib/Bio/Phylo/Util/Exceptions.pm 89.3 46.0 0.0 93.8 100.0 0.5 81.9
blib/lib/Bio/Phylo/Util/IDPool.pm 81.8 50.0 n/a 75.0 n/a 0.2 76.4
blib/lib/Bio/Phylo/Util/Logger.pm 55.7 35.9 27.7 61.5 94.1 10.1 51.9
blib/lib/Bio/Phylo/Util/MOP.pm 62.5 40.0 25.0 66.6 0.0 2.6 55.2
blib/lib/Bio/Phylo/Util/Math.pm 70.0 28.5 n/a 71.4 100.0 0.0 63.0
blib/lib/Bio/Phylo/Util/OptionalInterface.pm 89.4 50.0 n/a 100.0 n/a 0.0 88.0
blib/lib/Bio/Phylo/Util/StackTrace.pm 58.3 83.3 n/a 75.0 100.0 0.1 64.5
blib/lib/Bio/PhyloRole.pm 81.0 75.0 35.0 92.3 100.0 0.6 74.3