| line |
count |
pod |
subroutine |
|
2
|
1 |
n/a |
BEGIN |
|
3
|
1 |
n/a |
BEGIN |
|
4
|
1 |
n/a |
BEGIN |
|
5
|
1 |
n/a |
BEGIN |
|
6
|
1 |
n/a |
BEGIN |
|
7
|
1 |
n/a |
BEGIN |
|
8
|
1 |
n/a |
BEGIN |
|
9
|
1 |
n/a |
BEGIN |
|
14
|
1 |
n/a |
BEGIN |
|
14
|
1 |
n/a |
BEGIN |
|
208
|
5 |
Yes |
sample |
|
280
|
0 |
n/a |
__ANON__ |
|
366
|
0 |
n/a |
_sample_newick |
|
370
|
0 |
n/a |
__ANON__ |
|
407
|
1 |
Yes |
sample_b |
|
483
|
1 |
Yes |
sample_bd |
|
520
|
1 |
n/a |
BEGIN |
|
522
|
1 |
n/a |
BEGIN |
|
598
|
1 |
Yes |
sample_incomplete_sampling_bd |
|
648
|
1 |
n/a |
BEGIN |
|
650
|
1 |
n/a |
BEGIN |
|
652
|
1 |
n/a |
BEGIN |
|
654
|
1 |
n/a |
BEGIN |
|
667
|
1 |
n/a |
BEGIN |
|
687
|
1 |
n/a |
BEGIN |
|
770
|
1 |
Yes |
sample_memoryless_b |
|
837
|
1 |
Yes |
sample_constant_rate_bd |
|
997
|
22 |
Yes |
constant_rate_birth |
|
1022
|
0 |
Yes |
external_model |
|
1053
|
50 |
Yes |
constant_rate_birth_death |
|
1206
|
0 |
Yes |
diversity_dependent_speciation |
|
1369
|
0 |
No |
temporal_shift_birth_death |
|
1532
|
0 |
Yes |
evolving_speciation_rate |
|
1682
|
0 |
Yes |
clade_shifts |
|
1951
|
0 |
Yes |
beta_binomial |
|
2102
|
15 |
No |
copy_tree |
|
2125
|
987 |
No |
truncate_tree_time |
|
2167
|
5 |
No |
truncate_tree_size |
|
2200
|
0 |
n/a |
_get_ultrametric_size |
|
2236
|
0 |
No |
remove_extinct_species |
|
2278
|
5 |
No |
prune_tips |
|
2285
|
1511 |
n/a |
__ANON__ |
|
2323
|
44 |
No |
lineage_through_time |
|
2369
|
3622 |
n/a |
_recursive_ltt_helper |
|
2403
|
1511 |
n/a |
_calc_node_properties |
|
2447
|
0 |
No |
nchoosek |