| line |
!l |
l&&!r |
l&&r |
condition |
|
225
|
5 |
0 |
0 |
$options{'threads'} > 1 and not $Bio::Phylo::EvolutionaryModels::Config{'useithreads'} |
|
252
|
5 |
0 |
0 |
defined $options{'incomplete_sampling'} and $options{'incomplete_sampling'} |
|
|
0 |
0 |
0 |
defined $options{'incomplete_sampling'} and $options{'incomplete_sampling'} and not defined $options{'algorithm_options'}{'sampling_probability'} |
|
307
|
0 |
0 |
0 |
defined $options{'output_format'} and $options{'output_format'} eq 'newick' |
|
326
|
1 |
4 |
0 |
defined $options{'output_format'} and $options{'output_format'} eq 'newick' |
|
|
1 |
0 |
4 |
defined $options{'output_format'} and $options{'output_format'} eq 'forest' |
|
616
|
0 |
1 |
0 |
ref $sampling_probability and scalar @{$sampling_probability;} != $mstar - $options{'tree_size'} + 1 |
|
1069
|
0 |
28 |
22 |
defined $options{'death_rate'} and $options{'death_rate'} == 0 |
|
1086
|
50 |
0 |
0 |
defined $options{'root_edge'} and $options{'root_edge'} |
|
1108
|
0 |
36 |
3096 |
$tree_size > 0 and $tree_size < $options{'tree_size'} |
|
|
36 |
0 |
3096 |
$tree_size > 0 and $tree_size < $options{'tree_size'} and $time < $options{'tree_age'} |
|
1227
|
0 |
0 |
0 |
defined $options{'death_rate'} and $options{'death_rate'} == 0 |
|
1248
|
0 |
0 |
0 |
defined $options{'root_edge'} and $options{'root_edge'} |
|
1270
|
0 |
0 |
0 |
$tree_size > 0 and $tree_size < $options{'tree_size'} |
|
|
0 |
0 |
0 |
$tree_size > 0 and $tree_size < $options{'tree_size'} and $time < $options{'tree_age'} |
|
1406
|
0 |
0 |
0 |
defined $options{'root_edge'} and $options{'root_edge'} |
|
1424
|
0 |
0 |
0 |
$tree_size > 0 and $tree_size < $options{'tree_size'} |
|
|
0 |
0 |
0 |
$tree_size > 0 and $tree_size < $options{'tree_size'} and $time < $options{'tree_age'} |
|
1566
|
0 |
0 |
0 |
defined $options{'root_edge'} and $options{'root_edge'} |
|
1578
|
0 |
0 |
0 |
$tree_size < $options{'tree_size'} and $time < $options{'tree_age'} |
|
1595
|
0 |
0 |
0 |
$selected < scalar @terminals and $rand_select > $birth_rates[$selected] |
|
1741
|
0 |
0 |
0 |
defined $options{'root_edge'} and $options{'root_edge'} |
|
1773
|
0 |
0 |
0 |
$tree_size > 0 and $tree_size < $options{'tree_size'} |
|
|
0 |
0 |
0 |
$tree_size > 0 and $tree_size < $options{'tree_size'} and $time < $options{'tree_age'} |
|
1831
|
0 |
0 |
0 |
$selected < scalar @terminals and $rand_select > $birth_rates[$selected] |
|
1843
|
0 |
0 |
0 |
$selected < scalar @terminals and $rand_select > $death_rates[$selected] |
|
1985
|
0 |
0 |
0 |
defined $options{'root_edge'} and $options{'root_edge'} |
|
1997
|
0 |
0 |
0 |
$tree_size < $options{'tree_size'} and $time < $options{'tree_age'} |
|
2014
|
0 |
0 |
0 |
$selected < scalar @terminals and $rand_select > $birth_rates[$selected] |
|
2334
|
16 |
28 |
594 |
scalar @extinction and ($end_time - $extinction[-1]) / $end_time < 1e-06 |
|
2340
|
30 |
1209 |
1588 |
scalar @speciation and $speciation[0] < $extinction[0] |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
262
|
4 |
1 |
0 |
defined $options{'model'} or $options{'algorithm'} eq 'constant_rate_bd' |
|
443
|
0 |
5 |
11 |
$expected_samples > 1 or rand 1 < $expected_samples |
|
537
|
0 |
5 |
3 |
$expected_samples > 1 or rand 1 < $expected_samples |
|
712
|
1 |
4 |
3 |
$expected_samples > 1 or rand 1 < $expected_samples |
|
1056
|
50 |
0 |
0 |
defined $options{'tree_size'} or defined $options{'tree_age'} |
|
1134
|
1843 |
0 |
1253 |
$next_speciation < $next_extinction or not defined $next_extinction |
|
1209
|
0 |
0 |
0 |
defined $options{'tree_size'} or defined $options{'tree_age'} |
|
1296
|
0 |
0 |
0 |
$next_speciation < $next_extinction or not defined $next_extinction |
|
1372
|
0 |
0 |
0 |
defined $options{'tree_size'} or defined $options{'tree_age'} |
|
1464
|
0 |
0 |
0 |
$next_speciation < $next_extinction or not defined $next_extinction |
|
1535
|
0 |
0 |
0 |
defined $options{'tree_size'} or defined $options{'tree_age'} |
|
1685
|
0 |
0 |
0 |
defined $options{'tree_size'} or defined $options{'tree_age'} |
|
1867
|
0 |
0 |
0 |
$next_speciation < $next_extinction or not defined $next_extinction |
|
1954
|
0 |
0 |
0 |
defined $options{'tree_size'} or defined $options{'tree_age'} |
|
2340
|
201 |
1588 |
1239 |
scalar @extinction == 0 or scalar @speciation and $speciation[0] < $extinction[0] |
|
2449
|
0 |
0 |
0 |
$k > $n or $k < 0 |