blib/lib/GenOO/Data/DB/DBIC/Species/Schema.pm
|
97.1
|
50.0
|
33.3
|
100.0
|
0.0
|
0.3
|
88.4
|
blib/lib/GenOO/Data/DB/DBIC/Species/Schema/SampleResultBase/v2.pm
|
80.0
|
0.0
|
n/a
|
80.0
|
0.0
|
0.0
|
69.5
|
blib/lib/GenOO/Data/File/BED.pm
|
93.4
|
72.7
|
n/a
|
100.0
|
0.0
|
2.5
|
79.3
|
blib/lib/GenOO/Data/File/BED/Record.pm
|
47.0
|
0.0
|
n/a
|
75.0
|
0.0
|
0.0
|
31.4
|
blib/lib/GenOO/Data/File/FASTA.pm
|
93.7
|
80.0
|
66.6
|
100.0
|
0.0
|
0.5
|
89.1
|
blib/lib/GenOO/Data/File/FASTA/Record.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
0.0
|
0.1
|
91.6
|
blib/lib/GenOO/Data/File/FASTQ.pm
|
95.2
|
50.0
|
n/a
|
100.0
|
0.0
|
0.6
|
88.1
|
blib/lib/GenOO/Data/File/FASTQ/Record.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
0.0
|
0.1
|
91.6
|
blib/lib/GenOO/Data/File/GFF.pm
|
96.1
|
76.9
|
n/a
|
100.0
|
0.0
|
26.5
|
90.3
|
blib/lib/GenOO/Data/File/GFF/Record.pm
|
82.7
|
35.7
|
n/a
|
88.8
|
0.0
|
9.3
|
68.5
|
blib/lib/GenOO/Data/File/SAM.pm
|
92.1
|
78.5
|
n/a
|
90.9
|
0.0
|
6.4
|
86.0
|
blib/lib/GenOO/Data/File/SAM/Cigar.pm
|
90.7
|
86.9
|
58.6
|
95.4
|
0.0
|
0.3
|
76.8
|
blib/lib/GenOO/Data/File/SAM/CigarAndMDZ.pm
|
100.0
|
100.0
|
75.0
|
100.0
|
0.0
|
0.1
|
92.5
|
blib/lib/GenOO/Data/File/SAM/MDZ.pm
|
100.0
|
77.7
|
n/a
|
100.0
|
0.0
|
0.2
|
89.4
|
blib/lib/GenOO/Data/File/SAM/Record.pm
|
90.9
|
65.0
|
n/a
|
93.1
|
0.0
|
1.6
|
76.4
|
blib/lib/GenOO/Data/Structure/DoubleHashArray.pm
|
98.5
|
87.5
|
55.5
|
100.0
|
0.0
|
2.8
|
85.8
|
blib/lib/GenOO/Exon.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/Gene.pm
|
71.8
|
50.0
|
88.8
|
75.0
|
0.0
|
2.0
|
66.8
|
blib/lib/GenOO/GeneCollection/Factory/FromTranscriptCollection.pm
|
98.1
|
72.2
|
100.0
|
100.0
|
0.0
|
0.3
|
91.7
|
blib/lib/GenOO/GeneCollection/Factory/GTF.pm
|
94.9
|
75.0
|
53.3
|
100.0
|
0.0
|
11.2
|
82.2
|
blib/lib/GenOO/GenomicRegion.pm
|
100.0
|
75.0
|
n/a
|
100.0
|
0.0
|
0.9
|
91.8
|
blib/lib/GenOO/Intron.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/Junction.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/Module/Search/Binary.pm
|
100.0
|
90.0
|
66.6
|
100.0
|
0.0
|
0.1
|
90.9
|
blib/lib/GenOO/Region.pm
|
80.6
|
78.2
|
67.9
|
83.3
|
0.0
|
0.6
|
70.5
|
blib/lib/GenOO/RegionCollection.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
0.0
|
0.1
|
93.7
|
blib/lib/GenOO/RegionCollection/Factory.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.3
|
100.0
|
blib/lib/GenOO/RegionCollection/Factory/BED.pm
|
100.0
|
100.0
|
n/a
|
100.0
|
0.0
|
0.1
|
96.1
|
blib/lib/GenOO/RegionCollection/Factory/DBIC.pm
|
100.0
|
50.0
|
n/a
|
100.0
|
0.0
|
4.1
|
84.0
|
blib/lib/GenOO/RegionCollection/Factory/RegionArray.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
0.0
|
1.1
|
95.0
|
blib/lib/GenOO/RegionCollection/Factory/Requires.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/RegionCollection/Factory/SAM.pm
|
100.0
|
100.0
|
66.6
|
100.0
|
0.0
|
0.1
|
93.3
|
blib/lib/GenOO/RegionCollection/Type/DBIC.pm
|
77.9
|
43.7
|
50.0
|
82.7
|
0.0
|
1.6
|
64.3
|
blib/lib/GenOO/RegionCollection/Type/DoubleHashArray.pm
|
75.9
|
37.5
|
33.3
|
83.3
|
0.0
|
1.9
|
64.8
|
blib/lib/GenOO/Spliceable.pm
|
93.3
|
73.6
|
n/a
|
100.0
|
0.0
|
3.6
|
86.2
|
blib/lib/GenOO/Transcript.pm
|
92.9
|
56.6
|
33.3
|
100.0
|
0.0
|
0.1
|
77.0
|
blib/lib/GenOO/Transcript/CDS.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/Transcript/Part.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/Transcript/UTR3.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/Transcript/UTR5.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/TranscriptCollection.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
0.0
|
0.1
|
93.7
|
blib/lib/GenOO/TranscriptCollection/Factory.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
n/a
|
0.0
|
100.0
|
blib/lib/GenOO/TranscriptCollection/Factory/FromGeneCollection.pm
|
100.0
|
n/a
|
n/a
|
100.0
|
0.0
|
0.2
|
96.6
|
blib/lib/GenOO/TranscriptCollection/Factory/GTF.pm
|
93.2
|
83.3
|
41.6
|
100.0
|
0.0
|
18.2
|
80.5
|