Coverage Summary

Module App-Sandy
Version 0.24
Database: /root/.cpan/build/App-Sandy-0.24-0/cover_db
Report date: 2023-07-31 17:01:43
Perl version: v5.26.1
OS: linux
Thresholds: < 75% < 90% < 100% = 100%

Restrict to regex:

file stmt bran cond sub pod time total
Total 46.3 26.2 18.6 61.4 42.1 100.0 42.2
/usr/local/lib/perl5/5.26.1/x86_64-linux/CORE/inline.h 50.0 n/a n/a n/a n/a n/a 50.0
lib/App/Sandy.pm 75.0 n/a n/a 50.0 100.0 0.0 71.4
lib/App/Sandy/BGZF.pm 42.8 0.0 n/a 50.0 0.0 0.0 38.1
lib/App/Sandy/Base.pm 93.3 62.5 n/a 100.0 0.0 12.1 88.6
lib/App/Sandy/CLI.pm 85.7 n/a n/a 66.6 100.0 0.0 81.8
lib/App/Sandy/CLI/App.pm 10.7 0.0 0.0 13.3 100.0 0.0 11.9
lib/App/Sandy/CLI/Command.pm 37.5 0.0 0.0 20.0 100.0 0.0 33.3
lib/App/Sandy/Command/Citation.pm 50.0 0.0 n/a 33.3 100.0 0.0 46.1
lib/App/Sandy/Command/Expression.pm 40.9 0.0 n/a 42.8 66.6 0.0 38.8
lib/App/Sandy/Command/Expression/Add.pm 12.5 0.0 n/a 20.0 100.0 0.0 17.5
lib/App/Sandy/Command/Expression/Dump.pm 21.4 0.0 n/a 33.3 100.0 0.0 26.0
lib/App/Sandy/Command/Expression/Remove.pm 21.4 0.0 n/a 33.3 100.0 0.0 24.0
lib/App/Sandy/Command/Expression/Restore.pm 30.0 0.0 n/a 33.3 100.0 0.0 31.5
lib/App/Sandy/Command/Genome.pm 60.0 n/a n/a 33.3 0.0 0.0 40.0
lib/App/Sandy/Command/Quality.pm 40.9 0.0 n/a 42.8 66.6 0.0 38.8
lib/App/Sandy/Command/Quality/Add.pm 19.3 0.0 0.0 33.3 100.0 0.0 20.0
lib/App/Sandy/Command/Quality/Dump.pm 20.0 0.0 n/a 33.3 100.0 0.0 25.0
lib/App/Sandy/Command/Quality/Remove.pm 21.4 0.0 n/a 33.3 100.0 0.0 24.0
lib/App/Sandy/Command/Quality/Restore.pm 30.0 0.0 n/a 33.3 100.0 0.0 31.5
lib/App/Sandy/Command/Transcriptome.pm 60.0 n/a n/a 33.3 0.0 0.0 40.0
lib/App/Sandy/Command/Variation.pm 40.9 0.0 n/a 42.8 66.6 0.0 38.8
lib/App/Sandy/Command/Variation/Add.pm 20.6 0.0 n/a 33.3 100.0 0.0 22.9
lib/App/Sandy/Command/Variation/Dump.pm 18.7 0.0 n/a 33.3 100.0 0.0 24.0
lib/App/Sandy/Command/Variation/Remove.pm 21.4 0.0 n/a 33.3 100.0 0.1 24.0
lib/App/Sandy/Command/Variation/Restore.pm 30.0 0.0 n/a 33.3 100.0 0.0 31.5
lib/App/Sandy/Command/Version.pm 66.6 0.0 n/a 50.0 100.0 0.0 58.8
lib/App/Sandy/DB.pm 52.1 0.0 n/a 80.0 n/a 0.9 50.0
lib/App/Sandy/DB/Handle/Expression.pm 18.5 0.0 n/a 50.0 0.0 0.4 16.9
lib/App/Sandy/DB/Handle/Quality.pm 10.5 0.0 0.0 37.5 0.0 0.0 9.2
lib/App/Sandy/DB/Handle/Variation.pm 8.5 0.0 0.0 43.7 0.0 0.1 6.9
lib/App/Sandy/DB/Schema.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/DB/Schema/Result/ExpressionMatrix.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/DB/Schema/Result/QualityProfile.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/DB/Schema/Result/StructuralVariation.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/InterlaceProcesses.pm 64.2 0.0 n/a 75.0 0.0 0.0 57.1
lib/App/Sandy/PieceTable.pm 72.9 51.7 57.1 94.4 0.0 1.7 67.0
lib/App/Sandy/Quality.pm 51.0 40.0 n/a 70.0 0.0 3.7 51.4
lib/App/Sandy/RNG.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/Read.pm 92.4 76.6 41.6 93.7 0.0 5.0 82.6
lib/App/Sandy/Read/PairedEnd.pm 91.6 50.0 50.0 100.0 0.0 0.4 78.9
lib/App/Sandy/Read/SingleEnd.pm 90.9 75.0 n/a 100.0 0.0 0.1 83.3
lib/App/Sandy/Role/BSearch.pm 100.0 100.0 n/a 100.0 0.0 0.7 96.0
lib/App/Sandy/Role/Counter.pm 21.4 0.0 n/a 33.3 0.0 0.0 20.0
lib/App/Sandy/Role/Digest.pm 14.0 0.0 0.0 61.1 0.0 0.0 10.8
lib/App/Sandy/Role/IO.pm 86.2 41.6 n/a 87.5 0.0 0.1 69.8
lib/App/Sandy/Role/ParseArgv.pm 46.1 0.0 n/a 66.6 0.0 0.0 42.1
lib/App/Sandy/Role/RunTimeTemplate.pm 100.0 50.0 n/a 100.0 0.0 0.0 83.3
lib/App/Sandy/Role/SeqID.pm 100.0 50.0 n/a 100.0 0.0 0.0 84.6
lib/App/Sandy/Role/Statistic.pm 28.5 0.0 n/a 40.0 0.0 0.0 22.8
lib/App/Sandy/Role/Template/Fastq.pm 100.0 n/a n/a 100.0 0.0 0.2 88.8
lib/App/Sandy/Role/Template/Sam.pm 24.3 0.0 n/a 33.3 0.0 0.0 22.6
lib/App/Sandy/Seq.pm 53.9 11.1 n/a 70.5 0.0 0.3 47.5
lib/App/Sandy/Seq/PairedEnd.pm 96.5 77.7 n/a 100.0 0.0 1.1 87.2
lib/App/Sandy/Seq/SingleEnd.pm 95.6 62.5 n/a 100.0 0.0 1.1 84.2
lib/App/Sandy/Simulator.pm 59.0 38.6 22.2 71.1 0.0 69.3 52.4
lib/App/Sandy/Types.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/WeightedRaffle.pm 94.1 75.0 100.0 100.0 0.0 1.2 88.8
xs/RNG.xs 37.5 50.0 n/a n/a n/a n/a 38.4
xs/gauss.c 19.3 30.0 n/a n/a n/a n/a 21.9
xs/ranlxd.c 95.6 97.7 n/a n/a n/a n/a 96.3
xs/rng.c 37.9 33.3 n/a n/a n/a n/a 37.1
xs/sandy_rng.h 25.0 0.0 n/a n/a n/a n/a 20.0