| line |
!l |
l&&!r |
l&&r |
condition |
|
162
|
0 |
0 |
0 |
%QUALITY_PROFILE and exists $QUALITY_PROFILE{$opts->{'quality-profile'}}
|
|
180
|
0 |
0 |
0 |
%STRUCTURAL_VARIATION and exists $STRUCTURAL_VARIATION{$sv}
|
|
251
|
0 |
0 |
0 |
defined $opts->{'coverage'} and $opts->{'coverage'} <= 0
|
|
262
|
0 |
0 |
0 |
defined $opts->{'number-of-reads'} and $opts->{'number-of-reads'} <= 0
|
|
293
|
0 |
0 |
0 |
%EXPRESSION_MATRIX and exists $EXPRESSION_MATRIX{$opts->{'expression-matrix'}}
|
|
351
|
0 |
0 |
0 |
$opts->{'output-format'} =~ /fastq/u and $opts->{'sequencing-type'} eq "paired-end"
|
|
|
0 |
0 |
0 |
$opts->{'output-format'} =~ /fastq/u and $opts->{'sequencing-type'} eq "paired-end" and $opts->{'join-paired-ends'}
|
|
470
|
0 |
0 |
0 |
$entry->{'type'} && $entry->{'type'} eq 'single-molecule'
|