Coverage Summary

Module Bio-VertRes-Config
Version 1.133090
Database: /.cpan/build/Bio-VertRes-Config-1.133090-oN9m2J/cover_db
Report date: 2014-08-30 08:37:23
Perl version: v5.20.0
OS: linux
Thresholds: < 75% < 90% < 100% = 100%

Restrict to regex:

file stmt bran cond sub pod time total
Total 33.3 n/a n/a 100.0 n/a 100.0 50.0
lib/Bio/VertRes/Config/CommandLine/Common.pm 33.3 n/a n/a 100.0 n/a 1.7 50.0
lib/Bio/VertRes/Config/CommandLine/ConstructLimits.pm 33.3 n/a n/a 100.0 n/a 1.6 50.0
lib/Bio/VertRes/Config/CommandLine/LogParameters.pm 33.3 n/a n/a 100.0 n/a 1.7 50.0
lib/Bio/VertRes/Config/Pipelines/AnnotateAssembly.pm 33.3 n/a n/a 100.0 n/a 1.4 50.0
lib/Bio/VertRes/Config/Pipelines/Assembly.pm 33.3 n/a n/a 100.0 n/a 1.6 50.0
lib/Bio/VertRes/Config/Pipelines/BamImprovement.pm 33.3 n/a n/a 100.0 n/a 1.5 50.0
lib/Bio/VertRes/Config/Pipelines/Bowtie2Mapping.pm 33.3 n/a n/a 100.0 n/a 1.8 50.0
lib/Bio/VertRes/Config/Pipelines/BwaMapping.pm 33.3 n/a n/a 100.0 n/a 2.8 50.0
lib/Bio/VertRes/Config/Pipelines/Common.pm 33.3 n/a n/a 100.0 n/a 2.0 50.0
lib/Bio/VertRes/Config/Pipelines/Import.pm 33.3 n/a n/a 100.0 n/a 1.8 50.0
lib/Bio/VertRes/Config/Pipelines/Mapping.pm 33.3 n/a n/a 100.0 n/a 1.6 50.0
lib/Bio/VertRes/Config/Pipelines/QC.pm 33.3 n/a n/a 100.0 n/a 1.6 50.0
lib/Bio/VertRes/Config/Pipelines/RnaSeqExpression.pm 33.3 n/a n/a 100.0 n/a 1.6 50.0
lib/Bio/VertRes/Config/Pipelines/SmaltMapping.pm 33.3 n/a n/a 100.0 n/a 1.6 50.0
lib/Bio/VertRes/Config/Pipelines/SnpCalling.pm 33.3 n/a n/a 100.0 n/a 1.7 50.0
lib/Bio/VertRes/Config/Pipelines/SpadesAssembly.pm 33.3 n/a n/a 100.0 n/a 1.5 50.0
lib/Bio/VertRes/Config/Pipelines/Ssaha2Mapping.pm 33.3 n/a n/a 100.0 n/a 2.0 50.0
lib/Bio/VertRes/Config/Pipelines/StampyMapping.pm 33.3 n/a n/a 100.0 n/a 1.3 50.0
lib/Bio/VertRes/Config/Pipelines/Store.pm 33.3 n/a n/a 100.0 n/a 3.2 50.0
lib/Bio/VertRes/Config/Pipelines/Tradis.pm 33.3 n/a n/a 100.0 n/a 1.7 50.0
lib/Bio/VertRes/Config/Pipelines/VelvetAssembly.pm 33.3 n/a n/a 100.0 n/a 1.4 50.0
lib/Bio/VertRes/Config/Recipes/BacteriaAssemblyAndAnnotation.pm 33.3 n/a n/a 100.0 n/a 1.7 50.0
lib/Bio/VertRes/Config/Recipes/BacteriaAssemblySingleCell.pm 33.3 n/a n/a 100.0 n/a 1.4 50.0
lib/Bio/VertRes/Config/Recipes/BacteriaRegisterAndQCStudy.pm 33.3 n/a n/a 100.0 n/a 3.2 50.0
lib/Bio/VertRes/Config/Recipes/BacteriaRnaSeqExpressionUsingBwa.pm 33.3 n/a n/a 100.0 n/a 1.9 50.0
lib/Bio/VertRes/Config/Recipes/BacteriaRnaSeqExpressionUsingSmalt.pm 33.3 n/a n/a 100.0 n/a 1.9 50.0
lib/Bio/VertRes/Config/Recipes/BacteriaSnpCallingUsingBwa.pm 33.3 n/a n/a 100.0 n/a 1.5 50.0
lib/Bio/VertRes/Config/Recipes/BacteriaSnpCallingUsingSmalt.pm 33.3 n/a n/a 100.0 n/a 1.6 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesAssembly.pm 33.3 n/a n/a 100.0 n/a 5.2 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingBwa.pm 33.3 n/a n/a 100.0 n/a 3.3 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingSmalt.pm 33.3 n/a n/a 100.0 n/a 4.5 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingSsaha2.pm 33.3 n/a n/a 100.0 n/a 4.9 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingStampy.pm 33.3 n/a n/a 100.0 n/a 3.9 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesRegisterAndQCStudy.pm 33.3 n/a n/a 100.0 n/a 2.4 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesRnaSeqExpressionUsingTophat.pm 33.3 n/a n/a 100.0 n/a 2.2 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingBwa.pm 33.3 n/a n/a 100.0 n/a 2.0 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingSmalt.pm 33.3 n/a n/a 100.0 n/a 1.8 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingSsaha2.pm 33.3 n/a n/a 100.0 n/a 2.1 50.0
lib/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingStampy.pm 33.3 n/a n/a 100.0 n/a 2.0 50.0
lib/Bio/VertRes/Config/Recipes/Global.pm 33.3 n/a n/a 100.0 n/a 2.6 50.0
lib/Bio/VertRes/Config/Recipes/HelminthRegisterAndQCStudy.pm 33.3 n/a n/a 100.0 n/a 2.3 50.0
lib/Bio/VertRes/Config/Recipes/VirusAssemblyAndAnnotation.pm 33.3 n/a n/a 100.0 n/a 2.1 50.0
lib/Bio/VertRes/Config/Recipes/VirusRegisterAndQCStudy.pm 33.3 n/a n/a 100.0 n/a 2.2 50.0
lib/Bio/VertRes/Config/References.pm 33.3 n/a n/a 100.0 n/a 1.2 50.0
lib/Bio/VertRes/Config/RegisterStudy.pm 33.3 n/a n/a 100.0 n/a 2.6 50.0