Coverage Summary

Module App-Sandy
Version 0.22
Database: /root/.cpan/build/App-Sandy-0.22-0/cover_db
Report date: 2018-12-20 19:04:09
Perl version: v5.26.1
OS: linux
Thresholds: < 75% < 90% < 100% = 100%

Restrict to regex:

file stmt bran cond sub pod time total
Total 45.3 22.2 19.2 61.7 41.8 100.0 40.8
lib/App/Sandy.pm 75.0 n/a n/a 50.0 100.0 0.0 71.4
lib/App/Sandy/BGZF.pm 42.8 0.0 n/a 50.0 0.0 0.1 38.1
lib/App/Sandy/Base.pm 93.3 62.5 n/a 100.0 0.0 20.8 88.6
lib/App/Sandy/CLI.pm 85.7 n/a n/a 66.6 100.0 0.0 81.8
lib/App/Sandy/CLI/App.pm 10.7 0.0 0.0 13.3 100.0 0.0 11.9
lib/App/Sandy/CLI/Command.pm 37.5 0.0 0.0 20.0 100.0 0.0 33.3
lib/App/Sandy/Command/Citation.pm 50.0 0.0 n/a 33.3 100.0 0.0 46.1
lib/App/Sandy/Command/Expression.pm 40.9 0.0 n/a 42.8 66.6 0.0 38.8
lib/App/Sandy/Command/Expression/Add.pm 12.5 0.0 n/a 20.0 100.0 0.2 17.5
lib/App/Sandy/Command/Expression/Dump.pm 21.4 0.0 n/a 33.3 100.0 0.0 26.0
lib/App/Sandy/Command/Expression/Remove.pm 21.4 0.0 n/a 33.3 100.0 0.0 24.0
lib/App/Sandy/Command/Expression/Restore.pm 30.0 0.0 n/a 33.3 100.0 0.0 31.5
lib/App/Sandy/Command/Genome.pm 60.0 n/a n/a 33.3 0.0 0.0 40.0
lib/App/Sandy/Command/Quality.pm 40.9 0.0 n/a 42.8 66.6 0.0 38.8
lib/App/Sandy/Command/Quality/Add.pm 19.3 0.0 0.0 33.3 100.0 0.0 20.0
lib/App/Sandy/Command/Quality/Dump.pm 20.0 0.0 n/a 33.3 100.0 0.0 25.0
lib/App/Sandy/Command/Quality/Remove.pm 21.4 0.0 n/a 33.3 100.0 0.0 24.0
lib/App/Sandy/Command/Quality/Restore.pm 30.0 0.0 n/a 33.3 100.0 0.0 31.5
lib/App/Sandy/Command/Transcriptome.pm 60.0 n/a n/a 33.3 0.0 0.0 40.0
lib/App/Sandy/Command/Variation.pm 40.9 0.0 n/a 42.8 66.6 0.0 38.8
lib/App/Sandy/Command/Variation/Add.pm 20.6 0.0 n/a 33.3 100.0 0.0 22.9
lib/App/Sandy/Command/Variation/Dump.pm 18.7 0.0 n/a 33.3 100.0 0.0 24.0
lib/App/Sandy/Command/Variation/Remove.pm 21.4 0.0 n/a 33.3 100.0 0.0 24.0
lib/App/Sandy/Command/Variation/Restore.pm 30.0 0.0 n/a 33.3 100.0 0.0 31.5
lib/App/Sandy/Command/Version.pm 66.6 0.0 n/a 50.0 100.0 0.1 58.8
lib/App/Sandy/DB.pm 52.1 0.0 n/a 80.0 n/a 1.6 50.0
lib/App/Sandy/DB/Handle/Expression.pm 18.5 0.0 n/a 50.0 0.0 0.1 16.9
lib/App/Sandy/DB/Handle/Quality.pm 10.5 0.0 0.0 37.5 0.0 0.7 9.2
lib/App/Sandy/DB/Handle/Variation.pm 8.5 0.0 0.0 43.7 0.0 0.0 6.9
lib/App/Sandy/DB/Schema.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/DB/Schema/Result/ExpressionMatrix.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/DB/Schema/Result/QualityProfile.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/DB/Schema/Result/StructuralVariation.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/InterlaceProcesses.pm 64.2 0.0 n/a 75.0 0.0 0.0 57.1
lib/App/Sandy/PieceTable.pm 72.9 51.7 57.1 94.4 0.0 0.9 67.0
lib/App/Sandy/Quality.pm 54.0 40.0 n/a 72.7 0.0 1.7 54.1
lib/App/Sandy/Read.pm 98.7 91.6 55.5 100.0 0.0 2.9 90.7
lib/App/Sandy/Read/PairedEnd.pm 91.6 50.0 50.0 100.0 0.0 0.2 78.9
lib/App/Sandy/Read/SingleEnd.pm 90.9 75.0 n/a 100.0 0.0 0.0 83.3
lib/App/Sandy/Role/BSearch.pm 93.3 83.3 n/a 100.0 0.0 0.3 88.0
lib/App/Sandy/Role/Counter.pm 21.4 0.0 n/a 33.3 0.0 0.0 20.0
lib/App/Sandy/Role/Digest.pm 14.0 0.0 0.0 61.1 0.0 0.0 10.8
lib/App/Sandy/Role/IO.pm 86.2 41.6 n/a 87.5 0.0 0.1 69.8
lib/App/Sandy/Role/ParseArgv.pm 46.1 0.0 n/a 66.6 0.0 0.0 42.1
lib/App/Sandy/Role/RNorm.pm 100.0 n/a n/a 100.0 0.0 0.1 91.6
lib/App/Sandy/Role/RunTimeTemplate.pm 100.0 50.0 n/a 100.0 0.0 0.1 83.3
lib/App/Sandy/Role/SeqID.pm 100.0 50.0 n/a 100.0 0.0 0.0 84.6
lib/App/Sandy/Role/Statistic.pm 28.5 0.0 n/a 40.0 0.0 0.0 22.8
lib/App/Sandy/Role/Template/Fastq.pm 100.0 n/a n/a 100.0 0.0 0.0 88.8
lib/App/Sandy/Role/Template/Sam.pm 24.3 0.0 n/a 33.3 0.0 0.0 22.6
lib/App/Sandy/Seq.pm 54.8 11.1 n/a 70.5 0.0 0.2 48.0
lib/App/Sandy/Seq/PairedEnd.pm 96.5 66.6 n/a 100.0 0.0 0.5 83.6
lib/App/Sandy/Seq/SingleEnd.pm 95.6 62.5 n/a 100.0 0.0 0.5 84.2
lib/App/Sandy/Simulator.pm 61.9 41.3 22.9 72.7 0.0 67.0 54.8
lib/App/Sandy/Types.pm 100.0 n/a n/a 100.0 n/a 0.0 100.0
lib/App/Sandy/WeightedRaffle.pm 94.1 75.0 100.0 100.0 0.0 0.5 88.8