| line |
true |
false |
branch |
|
122
|
0 |
0 |
if ($check ne 0) |
|
130
|
0 |
0 |
if ($dproj ne 0) |
|
132
|
0 |
0 |
if (dot(@proj, @target) < 0) |
|
145
|
0 |
0 |
unless $name |
|
151
|
0 |
0 |
unless open FILE1, $filename or open FILE1, $filename2 |
|
165
|
0 |
0 |
unless $file |
|
168
|
0 |
0 |
if ($file =~ /\.gz$/) { } |
|
172
|
0 |
0 |
unless open $fh, "< $file" |
|
189
|
0 |
0 |
unless $pdb_code |
|
192
|
0 |
0 |
unless $pdb_code =~ /[A-z0-9]{4}/ |
|
202
|
0 |
0 |
if (-e $uncompressed) { } |
|
|
0 |
0 |
elsif (-e $compressed) { } |
|
227
|
0 |
0 |
unless $pdb_code |
|
230
|
0 |
0 |
unless $pdb_code =~ /[A-z0-9]{4}/ |
|
240
|
0 |
0 |
if (-e $uncompressed) { } |
|
|
0 |
0 |
elsif (-e $compressed) { } |
|
266
|
0 |
0 |
unless $pdb_code |
|
267
|
0 |
0 |
unless $chain |
|
270
|
0 |
0 |
unless $pdb_code =~ /[A-z0-9]{4}/ |
|
280
|
0 |
0 |
if (-e $uncompressed) { } |
|
|
0 |
0 |
elsif (-e $compressed) { } |
|
306
|
0 |
0 |
unless $pdb_code |
|
307
|
0 |
0 |
unless $chain |
|
310
|
0 |
0 |
unless $pdb_code =~ /[A-z0-9]{4}/ |
|
320
|
0 |
0 |
if (-e $uncompressed) { } |
|
|
0 |
0 |
elsif (-e $compressed) { } |
|
344
|
0 |
0 |
if ($DEBUG) |
|
352
|
0 |
0 |
unless $pdb_code |
|
353
|
0 |
0 |
unless $chain |
|
356
|
0 |
0 |
unless $pdb_code =~ /[A-z0-9]{4}/ |
|
362
|
0 |
0 |
if $path |
|
365
|
0 |
0 |
if $path |
|
367
|
0 |
0 |
unless $path |
|
382
|
0 |
0 |
if ($DEBUG) |
|
390
|
0 |
0 |
unless $pdb_code |
|
393
|
0 |
0 |
unless $pdb_code =~ /[A-z0-9]{4}/ |
|
398
|
0 |
0 |
if $path |
|
401
|
0 |
0 |
if $path |
|
404
|
0 |
0 |
if $path |
|
406
|
0 |
0 |
unless $path |
|
450
|
0 |
0 |
if ($$data[0] =~ m[/]) { } |
|
453
|
0 |
0 |
if ($filename =~ /pdb(\w{4}).*/) { } |
|
|
0 |
0 |
elsif ($filename =~ /(\w{4}).*/) { } |
|
483
|
0 |
0 |
if ($string ne 'CB') { } |
|
487
|
0 |
0 |
if ($line =~ /ATOM\s+-*\d+\s+$string\s+(\w+)\s$chain\s*(-*\d+\w?\s)/) |
|
492
|
0 |
0 |
if ($id =~ /(-*\d+)\D/) |
|
493
|
0 |
0 |
if ($id ne $prevres) |
|
494
|
0 |
0 |
if ($id > $endres) { } |
|
|
0 |
0 |
elsif ($id >= $startres) { } |
|
522
|
0 |
0 |
if ($line =~ /ATOM\s+-*\d+\s+CB\s+(\w+)\s$chain\s*(-*\d+\w?\s)/) { } |
|
|
0 |
0 |
elsif ($prevline =~ /ATOM\s+-*\d+\s+O\s+(\w+)\s$chain\s*(-*\d+\w?\s)/) { } |
|
525
|
0 |
0 |
if ($id =~ /(-*\d+)\D/) |
|
526
|
0 |
0 |
if ($id ne $prevres) |
|
527
|
0 |
0 |
if ($id > $endres) { } |
|
|
0 |
0 |
elsif ($id >= $startres) { } |
|
551
|
0 |
0 |
if ($id =~ /(-*\d+)\D/) |
|
552
|
0 |
0 |
if ($id ne $prevres) |
|
553
|
0 |
0 |
if ($id > $endres) { } |
|
|
0 |
0 |
elsif ($id >= $startres) { } |
|
579
|
0 |
0 |
if ($inp eq 'ALA') { } |
|
|
0 |
0 |
elsif ($inp eq 'CYS') { } |
|
|
0 |
0 |
elsif ($inp eq 'ASP') { } |
|
|
0 |
0 |
elsif ($inp eq 'GLU') { } |
|
|
0 |
0 |
elsif ($inp eq 'PHE') { } |
|
|
0 |
0 |
elsif ($inp eq 'GLY') { } |
|
|
0 |
0 |
elsif ($inp eq 'HIS') { } |
|
|
0 |
0 |
elsif ($inp eq 'ILE') { } |
|
|
0 |
0 |
elsif ($inp eq 'LYS') { } |
|
|
0 |
0 |
elsif ($inp eq 'LEU') { } |
|
|
0 |
0 |
elsif ($inp eq 'MET') { } |
|
|
0 |
0 |
elsif ($inp eq 'ASN') { } |
|
|
0 |
0 |
elsif ($inp eq 'PRO') { } |
|
|
0 |
0 |
elsif ($inp eq 'GLN') { } |
|
|
0 |
0 |
elsif ($inp eq 'ARG') { } |
|
|
0 |
0 |
elsif ($inp eq 'SER') { } |
|
|
0 |
0 |
elsif ($inp eq 'THR') { } |
|
|
0 |
0 |
elsif ($inp eq 'VAL') { } |
|
|
0 |
0 |
elsif ($inp eq 'TRP') { } |
|
609
|
0 |
0 |
if ($aa eq 'A') |
|
610
|
0 |
0 |
if ($aa eq 'C') |
|
611
|
0 |
0 |
if ($aa eq 'D') |
|
612
|
0 |
0 |
if ($aa eq 'E') |
|
613
|
0 |
0 |
if ($aa eq 'F') |
|
614
|
0 |
0 |
if ($aa eq 'G') |
|
615
|
0 |
0 |
if ($aa eq 'H') |
|
616
|
0 |
0 |
if ($aa eq 'I') |
|
617
|
0 |
0 |
if ($aa eq 'K') |
|
618
|
0 |
0 |
if ($aa eq 'L') |
|
619
|
0 |
0 |
if ($aa eq 'M') |
|
620
|
0 |
0 |
if ($aa eq 'N') |
|
621
|
0 |
0 |
if ($aa eq 'P') |
|
622
|
0 |
0 |
if ($aa eq 'Q') |
|
623
|
0 |
0 |
if ($aa eq 'R') |
|
624
|
0 |
0 |
if ($aa eq 'S') |
|
625
|
0 |
0 |
if ($aa eq 'T') |
|
626
|
0 |
0 |
if ($aa eq 'V') |
|
627
|
0 |
0 |
if ($aa eq 'W') |
|
628
|
0 |
0 |
if ($aa eq 'Y') |
|
702
|
0 |
0 |
if (abs $evec[0] >= abs $evec[1] and abs $evec[0] >= abs $evec[2]) { } |
|
|
0 |
0 |
elsif (abs $evec[1] >= abs $evec[2]) { } |
|
710
|
0 |
0 |
if ($evec[$i] * ($p[0][-1][$i] - $p[0][0][$i]) < 0) { } |
|
745
|
0 |
0 |
if ($type eq 'H') |
|
749
|
0 |
0 |
if ($ss == 1) { } |
|
775
|
0 |
0 |
if ($ss == 1) { } |
|
807
|
0 |
0 |
if ($type eq 'H') { } |
|
864
|
0 |
0 |
if ($evec[0] ** 2 + $evec[1] ** 2 + $evec[2] ** 2 < 0.01) |
|
870
|
0 |
0 |
if ($evec[0] ** 2 + $evec[1] ** 2 + $evec[2] ** 2 < 0.01) |
|
931
|
0 |
0 |
if ($eigs[0] > $eigs[1] and $eigs[0] > $eigs[2]) { } |
|
|
0 |
0 |
elsif ($eigs[1] > $eigs[2]) { } |
|
933
|
0 |
0 |
if ($eigs[1] > $eigs[2]) { } |
|
944
|
0 |
0 |
if ($eigs[0] > $eigs[2]) { } |
|
955
|
0 |
0 |
if ($eigs[0] > $eigs[1]) { } |
|
1109
|
0 |
0 |
if ($cos ne 1) |
|
1217
|
0 |
0 |
if ($_ > $m) |
|
1231
|
0 |
0 |
if ($_ < $m) |
|
1244
|
0 |
0 |
if ($val <= 40) |
|
1373
|
0 |
0 |
if ($t ne 0) |
|
1463
|
0 |
0 |
if ($t ne 0) |
|
1470
|
0 |
0 |
if ($rms > 0) { } |
|
1509
|
0 |
0 |
if (abs($evec[0]) + abs($evec[1]) + abs($evec[2]) + abs($evec[3]) < 0.001) |
|
1545
|
0 |
0 |
if ($evec[0] ** 2 + $evec[1] ** 2 + $evec[2] ** 2 + $evec[3] ** 2 < 0.001) |
|
1577
|
0 |
0 |
if ($evec[0] ** 2 + $evec[1] ** 2 + $evec[2] ** 2 + $evec[3] ** 2 < 0.001) |
|
1666
|
0 |
0 |
if (dot(@v23, @dirvec) < 0) |