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77
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unless &GetOptions("reference|r=s{1,}", \my @reference_files, "target|t=s", \my $target_file, "weights|w=s", \my $weights_file, "append-prefixes=s{1,}", \my @append_prefixes, "out-file|o=s", \my $out_file_arg, "max-out:i", \my $max_out, "max-number-vars:i", \my $max_number_vars, "include-hpo-ascendants", \my $include_hpo_ascendants, "export|e:s", \my $export, "align|a:s", \my $align, "cytoscape-json:s", \my $cytoscape_json, "graph-stats:s", \my $graph_stats, "sort-by=s", \my $sort_by, "similarity-metric-cohort=s", \my $similarity_metric_cohort, "patients-of-interest|poi=s{1,}", \my @patients_of_interest, "poi-out-dir=s", \my $poi_out_dir, "include-terms=s{1,11}", \my @include_terms, "exclude-terms=s{1,11}", \my @exclude_terms, "retain-excluded-phenotypicFeatures", \my $retain_excluded_phenotypicFeatures, "prp|precomputed-ref-prefix=s", \my $precomputed_ref_prefix, "max-matrix-records-in-ram=i", \my $max_matrix_records_in_ram, "config=s", \my $config_file, "age!", \$age, "help|?", \my $help, "log:s", \my $log, "man", \my $man, "debug=i", \my $debug, "verbose|", \my $verbose, "color!", \$color, "version|V", sub {
say "$0 Version $main::VERSION";
exit;
}
) |