| line |
true |
false |
branch |
|
84
|
0 |
19 |
unless (exists $config->{'allowed_terms'} and &ArrayRef()->check($config->{'allowed_terms'}) and @{$config->{'allowed_terms'};}) |
|
103
|
15 |
4 |
defined $self->{'exclude_variables_regex'} ? : |
|
115
|
15 |
4 |
defined $config->{'seed'} && &Int()->check($config->{'seed'}) ? : |
|
117
|
18 |
1 |
if ($self->{'array_terms'}[0] ne "foo") |
|
118
|
0 |
18 |
unless (exists $config->{'id_correspondence'} and &HashRef()->check($config->{'id_correspondence'})) |
|
125
|
3 |
15 |
if (exists $config->{'format'} and &Str()->check($config->{'format'})) |
|
128
|
0 |
3 |
unless exists $config->{'id_correspondence'}{$config->{'format'}} |
|
235
|
1 |
18 |
if (@{$self->{'append_prefixes'};}) |
|
237
|
0 |
1 |
unless @{$self->{'reference_files'};} > 1 |
|
239
|
0 |
1 |
unless @{$self->{'reference_files'};} == @{$self->{'append_prefixes'};} |
|
241
|
0 |
19 |
if (@{$self->{'patients_of_interest'};}) |
|
243
|
0 |
0 |
unless @{$self->{'reference_files'};} |
|
279
|
11 |
8 |
defined $align ? : |
|
280
|
0 |
19 |
unless -d $align_dir |
|
282
|
0 |
19 |
defined $export ? : |
|
283
|
0 |
19 |
unless -d $export_dir |
|
296
|
1 |
18 |
if ($has_precomputed) { } |
|
298
|
0 |
1 |
if $self->{'verbose'} |
|
332
|
0 |
16 |
if ($include_hpo_ascendants) |
|
355
|
14 |
2 |
unless $target_file |
|
364
|
2 |
14 |
if ($target_file) |
|
386
|
0 |
16 |
if (defined $export) |
|
387
|
0 |
0 |
$export ? : |
|
412
|
0 |
16 |
unless -f $cohort_file |
|
428
|
15 |
1 |
if (ref $json_data eq ref []) { } |
|
429
|
0 |
15 |
unless exists $json_data->[0]{$primary_key} |
|
432
|
0 |
1 |
unless exists $json_data->{$primary_key} |
|
463
|
1 |
15 |
unless check_existence_of_include_terms($coverage_stats, $self->{'include_terms'}) |
|
468
|
12 |
3 |
unless defined $self->{'format'} |
|
481
|
0 |
15 |
if (keys %$glob_hash > $self->{'max_number_vars'}) |
|
529
|
0 |
2 |
unless exists $tar_data->{$primary_key} |
|
565
|
0 |
2 |
if $cli |
|
568
|
2 |
0 |
if (defined $align) |
|
569
|
0 |
2 |
$align ? : |
|
580
|
2 |
0 |
if defined $align |
|
590
|
1 |
15 |
if ($cytoscape_json) |
|
601
|
1 |
15 |
if (defined $graph_stats) |