Branch Coverage

pp-hmmexpectq.c

Criterion	Covered	Total	%
branch	0	346	0.0

line	true	false	branch
41	0	0	if (y-x > LOG_BIG) return y;
42	0	0	else if (x-y > LOG_BIG) return x;
44	0	0	else if (x
80	0	0	if (!__privtrans->broadcast.incs) return PDL->make_error(PDL_EUSERERROR, "Error in hmmexpectq:" "broadcast.incs NULL");
199	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Float,F)
200	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
209	0	0	for (qi=0; qi < __privtrans->ind_sizes[2]; qi++) {
211	0	0	if (i < 0) break;
218	0	0	for (qi=0; qi < __privtrans->ind_sizes[2]; qi++) {
220	0	0	if (i < 0) break;
227	0	0	for (t--; t>=0; t--) {
232	0	0	for (qi=0; qi<__privtrans->ind_sizes[2]; qi++) {
234	0	0	if (i < 0) break;
238	0	0	for (qj=0; qj<__privtrans->ind_sizes[2]; qj++) {
240	0	0	if (j < 0) break;
248	0	0	if (t==0) (epi_datap)[0+(__inc_epi_N*(i))] = logadd(gamma_it, (epi_datap)[0+(__inc_epi_N*(i))]);
256	0	0	}PDL_BROADCASTLOOP_END_hmmexpectq_readdata
	0	0	}PDL_BROADCASTLOOP_END_hmmexpectq_readdata
259	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_Double,D)
260	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
269	0	0	for (qi=0; qi < __privtrans->ind_sizes[2]; qi++) {
271	0	0	if (i < 0) break;
278	0	0	for (qi=0; qi < __privtrans->ind_sizes[2]; qi++) {
280	0	0	if (i < 0) break;
287	0	0	for (t--; t>=0; t--) {
292	0	0	for (qi=0; qi<__privtrans->ind_sizes[2]; qi++) {
294	0	0	if (i < 0) break;
298	0	0	for (qj=0; qj<__privtrans->ind_sizes[2]; qj++) {
300	0	0	if (j < 0) break;
308	0	0	if (t==0) (epi_datap)[0+(__inc_epi_N*(i))] = logadd(gamma_it, (epi_datap)[0+(__inc_epi_N*(i))]);
316	0	0	}PDL_BROADCASTLOOP_END_hmmexpectq_readdata
	0	0	}PDL_BROADCASTLOOP_END_hmmexpectq_readdata
319	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
	0	0	PDL_DECLARE_PARAMS_hmmexpectq_1(PDL_LDouble,E)
320	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
	0	0	PDL_BROADCASTLOOP_START_hmmexpectq_readdata {
329	0	0	for (qi=0; qi < __privtrans->ind_sizes[2]; qi++) {
331	0	0	if (i < 0) break;
338	0	0	for (qi=0; qi < __privtrans->ind_sizes[2]; qi++) {
340	0	0	if (i < 0) break;
347	0	0	for (t--; t>=0; t--) {
352	0	0	for (qi=0; qi<__privtrans->ind_sizes[2]; qi++) {
354	0	0	if (i < 0) break;
358	0	0	for (qj=0; qj<__privtrans->ind_sizes[2]; qj++) {
360	0	0	if (j < 0) break;
368	0	0	if (t==0) (epi_datap)[0+(__inc_epi_N*(i))] = logadd(gamma_it, (epi_datap)[0+(__inc_epi_N*(i))]);
376	0	0	}PDL_BROADCASTLOOP_END_hmmexpectq_readdata
	0	0	}PDL_BROADCASTLOOP_END_hmmexpectq_readdata
419	0	0	if (!PDL) return (pdl_error){PDL_EFATAL, "PDL core struct is NULL, can't continue",0};
421	0	0	if (!__privtrans) return PDL->make_error_simple(PDL_EFATAL, "Couldn't create trans");
434	0	0	PDL_RETERROR(PDL_err, PDL->type_coerce(__privtrans));
435	0	0	PDL_RETERROR(PDL_err, PDL->make_trans_mutual(__privtrans));