| line |
true |
false |
branch |
|
44
|
0 |
2 |
unless $src and $tgt |
|
90
|
2 |
0 |
if defined $align->[0] |
|
91
|
2 |
0 |
if defined $align->[0] |
|
95
|
488 |
1 |
if (defined $t) { } |
|
96
|
0 |
488 |
$t - $last > 1 ? : |
|
107
|
2 |
0 |
if length $ps > length $pt |
|
108
|
2 |
0 |
unless length $ps > length $pt |
|
110
|
488 |
331 |
uc substr($ps, $_, 1) eq uc substr($pt, $_, 1) ? : |
|
146
|
0 |
0 |
if $seq[$i] ne "-" |
|
158
|
0 |
0 |
wantarray ? : |
|
184
|
109063 |
305393 |
$t eq $s ? : |
|
|
0 |
414456 |
$t eq $wildcard || $s eq $wildcard ? : |
|
188
|
131918 |
282538 |
$row[$#row][1] == 2 ? : |
|
192
|
197325 |
217131 |
$$scores[$col + 1][1] == 1 ? : |
|
196
|
197837 |
216619 |
if ($gap_src >= $gap_tgt and $gap_src >= $extend) { } |
|
|
132393 |
84226 |
elsif ($gap_tgt >= $extend) { } |
|
208
|
706 |
413750 |
if $score->[0] >= $max_score |
|
234
|
488 |
1 |
if $score->[1] == 0 |
|
235
|
0 |
1 |
if $score->[1] == 2 |
|
236
|
1 |
0 |
if $score->[1] == 1 |