Subroutine Coverage
| blib/lib/BioX/Workflow.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
45 |
50 |
90.0
|
| pod |
17 |
28 |
60.7
|
| line |
count |
pod |
subroutine |
|
3
|
2 |
n/a |
BEGIN |
|
6
|
2 |
n/a |
BEGIN |
|
7
|
2 |
n/a |
BEGIN |
|
8
|
2 |
n/a |
BEGIN |
|
9
|
2 |
n/a |
BEGIN |
|
10
|
2 |
n/a |
BEGIN |
|
11
|
2 |
n/a |
BEGIN |
|
12
|
2 |
n/a |
BEGIN |
|
13
|
2 |
n/a |
BEGIN |
|
14
|
2 |
n/a |
BEGIN |
|
17
|
2 |
n/a |
BEGIN |
|
18
|
2 |
n/a |
BEGIN |
|
19
|
2 |
n/a |
BEGIN |
|
20
|
2 |
n/a |
BEGIN |
|
21
|
2 |
n/a |
BEGIN |
|
22
|
2 |
n/a |
BEGIN |
|
23
|
2 |
n/a |
BEGIN |
|
24
|
2 |
n/a |
BEGIN |
|
25
|
2 |
n/a |
BEGIN |
|
37
|
2 |
n/a |
BEGIN |
|
699
|
0 |
Yes |
run |
|
715
|
6 |
No |
write_workflow_meta |
|
744
|
6 |
No |
init_things |
|
767
|
6 |
No |
set_global_yaml |
|
786
|
15 |
Yes |
save_env |
|
797
|
6 |
No |
workflow_load |
|
815
|
99 |
Yes |
make_outdir |
|
848
|
6 |
Yes |
get_samples |
|
903
|
20 |
Yes |
match_samples |
|
920
|
6 |
Yes |
plugin_load |
|
938
|
6 |
Yes |
class_load |
|
956
|
764 |
Yes |
make_template |
|
973
|
15 |
Yes |
create_attr |
|
1033
|
60 |
No |
eval_attr |
|
1061
|
0 |
No |
clear_attr |
|
1075
|
3 |
No |
write_pipeline |
|
1100
|
0 |
No |
write_min_files |
|
1122
|
3 |
No |
process_rules |
|
1146
|
9 |
No |
dothings |
|
1155
|
0 |
n/a |
__ANON__ |
|
1167
|
0 |
n/a |
__ANON__ |
|
1198
|
9 |
Yes |
check_keys |
|
1224
|
9 |
Yes |
clear_process_vars |
|
1240
|
9 |
Yes |
init_process_vars |
|
1294
|
18 |
Yes |
add_attr |
|
1313
|
18 |
Yes |
write_rule_meta |
|
1365
|
9 |
Yes |
write_process |
|
1410
|
30 |
Yes |
process_by_sample_outdir |
|
1445
|
9 |
Yes |
OUTPUT_to_INPUT |
|
1465
|
45 |
No |
process_template |