| line |
count |
pod |
subroutine |
|
26
|
1 |
n/a |
BEGIN |
|
28
|
1 |
n/a |
BEGIN |
|
29
|
1 |
n/a |
BEGIN |
|
30
|
1 |
n/a |
BEGIN |
|
32
|
1 |
n/a |
BEGIN |
|
119
|
2 |
Yes |
FastaReader |
|
140
|
6 |
n/a |
__ANON__ |
|
175
|
0 |
No |
FastaReader_old |
|
190
|
0 |
n/a |
__ANON__ |
|
235
|
2 |
Yes |
read_sequence_from_fasta_file |
|
258
|
1 |
Yes |
write_sequence_to_fasta_file |
|
283
|
2 |
Yes |
format_seq |
|
319
|
2 |
Yes |
validate_sequence |
|
359
|
1 |
Yes |
complement |
|
374
|
1 |
Yes |
revcom |
|
386
|
1 |
Yes |
base_content |
|
403
|
0 |
Yes |
degenerate_seq_to_regexp |
|
432
|
0 |
Yes |
degenerate_seq_match_sites |
|
456
|
0 |
Yes |
dna2peptide |
|
473
|
0 |
Yes |
codon2aa |
|
561
|
0 |
Yes |
generate_random_seqence |
|
582
|
0 |
No |
shuffle_sequences |
|
607
|
0 |
Yes |
rename_fasta_header |
|
649
|
0 |
Yes |
clean_fasta_header |