| blib/lib/Bio/Tools/Run/Hmmer.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 1 | 20 | 5.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 371 | 0 | 0 | 0 | ref $things[0] and $things[0]->isa('Bio::PrimarySeqI') |
| 0 | 0 | 0 | ref $things[0] and $things[0]->isa('Bio::Align::AlignI') |
| line | l | !l | condition |
|---|---|---|---|
| 533 | 7 | 0 | $self->{'program_name'} || '' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 224 | 0 | 0 | 0 | $self->program_name || $self->throw('The program must already be specified') |
| 273 | 0 | 0 | 0 | $self->o || $self->io->tempfile(-'dir', $self->tempdir) |
| 421 | 0 | 0 | 0 | $outfile or $progname eq 'hmmbuild' |
| 505 | 0 | 0 | 0 | $self->hmm || $self->throw('Need to specify either HMM file or Database') |