Subroutine Coverage 
| blib/lib/Bio/Tools/Run/Alignment/Probalign.pm | 
|  | 
| Criterion | Covered | Total | % | 
| subroutine | 15 | 23 | 65.2 | 
| pod | 8 | 8 | 100.0 | 
| line | count | pod | subroutine | 
| 120 | 1 | n/a | BEGIN | 
| 121 | 1 | n/a | BEGIN | 
| 122 | 1 | n/a | BEGIN | 
| 123 | 1 | n/a | BEGIN | 
| 124 | 1 | n/a | BEGIN | 
| 125 | 1 | n/a | BEGIN | 
| 126 | 1 | n/a | BEGIN | 
| 127 | 1 | n/a | BEGIN | 
| 128 | 1 | n/a | BEGIN | 
| 129 | 1 | n/a | BEGIN | 
| 135 | 1 | n/a | BEGIN | 
| 156 | 6 | Yes | program_name | 
| 170 | 3 | Yes | program_dir | 
| 185 | 1 | Yes | new | 
| 202 | 0 | n/a | AUTOLOAD | 
| 225 | 0 | Yes | error_string | 
| 245 | 0 | Yes | version | 
| 266 | 0 | Yes | run | 
| 295 | 0 | Yes | align | 
| 324 | 0 | n/a | _run | 
| 357 | 0 | n/a | _setinput | 
| 424 | 0 | n/a | _setparams | 
| 473 | 1 | Yes | aformat |