| line |
true |
false |
branch |
|
124
|
1 |
0 |
if $quiet |
|
170
|
0 |
0 |
if defined $value |
|
189
|
0 |
0 |
unless $exe = $self->executable |
|
210
|
1 |
0 |
if defined $value |
|
229
|
0 |
0 |
if (ref $in and $in->isa('Bio::Align::AlignI')) { } |
|
|
0 |
0 |
elsif (not -e $in) { } |
|
262
|
0 |
0 |
$self->f eq 'a' ? : |
|
265
|
0 |
0 |
if $self->w |
|
267
|
0 |
0 |
if (not -e $outfile or -z $outfile) |
|
316
|
0 |
0 |
unless -e $tempfile |
|
334
|
0 |
0 |
if ($file) |
|
335
|
0 |
0 |
if (-e $file) { } |
|
370
|
0 |
0 |
unless ($self->m) |
|
371
|
0 |
0 |
$self->_alphabet($infile) eq 'dna' ? : |
|
381
|
0 |
0 |
unless ($self->outfile_name) |
|
394
|
0 |
0 |
unless defined $value |
|
400
|
0 |
0 |
unless $value |
|
407
|
0 |
0 |
if $self->quiet or $self->verbose < 0 |