| line |
true |
false |
branch |
|
162
|
0 |
0 |
if defined $value |
|
181
|
0 |
0 |
unless $exe = $self->executable |
|
203
|
0 |
0 |
if (ref $in and $in->isa('Bio::Align::AlignI')) { } |
|
|
0 |
0 |
elsif (not -e $in) { } |
|
227
|
0 |
0 |
unless $self->nt |
|
237
|
0 |
0 |
if (not -e $outfile or -z $outfile) |
|
286
|
0 |
0 |
unless -e $tempfile |
|
304
|
0 |
0 |
if ($file) |
|
305
|
0 |
0 |
if (-e $file) { } |
|
313
|
0 |
0 |
if $alphabet eq 'dna' |
|
342
|
0 |
0 |
unless defined $value |
|
349
|
0 |
0 |
unless $value |
|
356
|
0 |
0 |
unless ($self->outfile_name) |
|
364
|
0 |
0 |
$^O =~ /mswin/i ? : |
|
365
|
0 |
0 |
if $self->quiet or $self->verbose < 0 |