| blib/lib/Bio/Tools/Run/Maq.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 0 | 26 | 0.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 482 | 0 | 0 | 0 | defined $read1 and defined $refseq |
| 484 | 0 | 0 | 0 | -e $read1 and -e $refseq |
| 0 | 0 | 0 | -e $read1 and -e $refseq and !defined($read2) || -e $read2 |
| line | l | !l | condition |
|---|---|---|---|
| 523 | 0 | 0 | $cmd ||= 'run' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 348 | 0 | 0 | 0 | defined $args{$_} or $self->throw("Required filearg '${_}' not specified") |
| 353 | 0 | 0 | 0 | open $out, '>', $args{$1} or $self->throw("Open for write error : $!") |
| 357 | 0 | 0 | 0 | open $err, '>', $args{$1} or $self->throw("Open for write error : $!") |
| 361 | 0 | 0 | 0 | open $in, '<', $args{$1} or $self->throw("Open for read error : $!") |
| 484 | 0 | 0 | 0 | !defined($read2) || -e $read2 |