Subroutine Coverage
| blib/lib/Bio/Tools/Run/Hmmer.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
8 |
20 |
40.0
|
| pod |
10 |
10 |
100.0
|
| line |
count |
pod |
subroutine |
|
115
|
1 |
n/a |
BEGIN |
|
117
|
1 |
n/a |
BEGIN |
|
118
|
1 |
n/a |
BEGIN |
|
119
|
1 |
n/a |
BEGIN |
|
121
|
1 |
n/a |
BEGIN |
|
182
|
1 |
Yes |
new |
|
223
|
0 |
Yes |
run |
|
241
|
0 |
Yes |
hmmalign |
|
268
|
0 |
Yes |
hmmbuild |
|
291
|
0 |
Yes |
hmmcalibrate |
|
310
|
0 |
Yes |
hmmemit |
|
333
|
0 |
Yes |
hmmpfam |
|
350
|
0 |
Yes |
hmmsearch |
|
367
|
0 |
n/a |
_setinput |
|
398
|
0 |
n/a |
_run |
|
476
|
0 |
n/a |
_setparams |
|
526
|
7 |
Yes |
program_name |
|
547
|
3 |
Yes |
program_dir |
|
561
|
0 |
n/a |
_writeSeqFile |
|
586
|
0 |
n/a |
_writeAlignFile |