Branch Coverage

Bio/SearchIO/gmap_f9.pm

Criterion	Covered	Total	%
branch	15	64	23.4

line	true	false	branch
155	118	86536	if ($_ =~ /^>/) { }
156	57	61	if ($result) { }
192	541	85995	if ($previous_hit_pos and abs $c->{'hit_pos'} - $previous_hit_pos > 1)
206	61	1	if ($result)
207	61	0	if @hsp_info
219	61	0	if $hit
239	86452	84	$c->{'query_base'} eq $c->{'hit_base'} ? :
240	86452	84	if $c->{'query_base'} eq $c->{'hit_base'}
269	0	602	$a->{'-query_length'} > $a->{'-hit_length'} ? :
321	0	0	unless $path->{'query'}
322	0	0	unless $path->{'db'}
323	0	0	unless $path->{'path_num'}
325	0	0	unless $path->{'path_total_num'}
327	0	0	unless $path->{'query_length'}
329	0	0	unless $path->{'exon_count'}
331	0	0	unless $path->{'trimmed_coverage'}
333	0	0	unless $path->{'percent_identity'}
335	0	0	unless $path->{'query_start'}
337	0	0	unless $path->{'query_end'}
339	0	0	unless $path->{'whole_genome_start'}
341	0	0	unless $path->{'whole_genome_end'}
343	0	0	unless $path->{'chromosome'}
345	0	0	unless $path->{'chromo_start'}
347	0	0	unless $path->{'chromo_end'}
348	0	0	unless $path->{'strand'}
349	0	0	unless $path->{'sense'}
382	0	0	unless $align->{'chromo_start'}
384	0	0	unless $align->{'chromo_end'}
386	0	0	unless $align->{'query_start'}
388	0	0	unless $align->{'query_end'}
390	0	0	unless $align->{'percent_identity'}
392	0	0	unless $align->{'align_length'}