| line |
true |
false |
branch |
|
162
|
0 |
93 |
if (not defined $number) { } |
|
169
|
0 |
93 |
if defined $converged |
|
176
|
0 |
93 |
if (defined $newhits_unclassified) { } |
|
177
|
0 |
0 |
if (ref($newhits_unclassified) =~ /ARRAY/i) { } |
|
187
|
93 |
0 |
if (defined $newhits_below) { } |
|
188
|
93 |
0 |
if (ref($newhits_below) =~ /ARRAY/i) { } |
|
198
|
93 |
0 |
if (defined $newhits_not_below) { } |
|
199
|
93 |
0 |
if (ref($newhits_not_below) =~ /ARRAY/i) { } |
|
209
|
93 |
0 |
if (defined $oldhits_below) { } |
|
210
|
93 |
0 |
if (ref($oldhits_below) =~ /ARRAY/i) { } |
|
220
|
93 |
0 |
if (defined $oldhits_newly_below) { } |
|
221
|
93 |
0 |
if (ref($oldhits_newly_below) =~ /ARRAY/i) { } |
|
231
|
93 |
0 |
if (defined $oldhits_not_below) { } |
|
232
|
93 |
0 |
if (ref($oldhits_not_below) =~ /ARRAY/i) { } |
|
242
|
93 |
0 |
if $h_f |
|
257
|
93 |
2 |
if (defined $value or not defined $previous) |
|
258
|
0 |
93 |
unless defined $value |
|
273
|
0 |
0 |
if (defined $value or not defined $previous) |
|
274
|
0 |
0 |
unless defined $value |
|
293
|
93 |
594 |
if (@_) |
|
309
|
79 |
1270 |
unless ($self->{'_hit_queue_started'}) |
|
325
|
0 |
0 |
unless ($self->{'_hit_queue_new_started'}) |
|
341
|
0 |
0 |
unless ($self->{'_hit_queue_old_started'}) |
|
422
|
0 |
1 |
unless (ref $hit eq 'HASH' or $hit->isa('Bio::Search::Hit::HitI')) |
|
428
|
0 |
1 |
if ($old) { } |
|
|
0 |
1 |
elsif (defined $old) { } |
|
429
|
0 |
0 |
if ($newly_below) { } |
|
|
0 |
0 |
elsif ($below) { } |
|
441
|
0 |
0 |
if ($below) { } |
|
|
0 |
0 |
elsif (defined $below) { } |
|
502
|
99 |
0 |
if (ref $self->{'_newhits_below_threshold'}) |
|
505
|
735 |
1641 |
unless ref do {
$$self{'_newhits_below_threshold'}
}->[$_] eq 'HASH' |
|
521
|
99 |
0 |
if (ref $self->{'_newhits_not_below_threshold'}) |
|
524
|
320 |
512 |
unless ref do {
$$self{'_newhits_not_below_threshold'}
}->[$_] eq 'HASH' |
|
545
|
99 |
0 |
if (ref $self->{'_newhits_unclassified'}) |
|
548
|
1 |
0 |
unless ref do {
$$self{'_newhits_unclassified'}
}->[$_] eq 'HASH' |
|
584
|
99 |
0 |
if (ref $self->{'_oldhits_below_threshold'}) |
|
587
|
218 |
109 |
unless ref do {
$$self{'_oldhits_below_threshold'}
}->[$_] eq 'HASH' |
|
603
|
99 |
0 |
if (ref $self->{'_oldhits_newly_below_threshold'}) |
|
606
|
6 |
3 |
unless ref do {
$$self{'_oldhits_newly_below_threshold'}
}->[$_] eq 'HASH' |
|
622
|
99 |
0 |
if (ref $self->{'_oldhits_not_below_threshold'}) |
|
625
|
10 |
5 |
unless ref do {
$$self{'_oldhits_not_below_threshold'}
}->[$_] eq 'HASH' |
|
660
|
0 |
0 |
unless defined $self->{'_hit_lookup'} |