| blib/lib/Bio/Nexml/Factory.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 0 | 59 | 0.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 298 | 0 | 0 | 0 | $taxon and $taxon->get_name |
| 446 | 0 | 0 | 0 | ref $bptree and $bptree->isa('Bio::Tree::TreeI') |
| 512 | 0 | 0 | 0 | defined $bootstrap and $bootstrap->looks_like_number |
| 599 | 0 | 0 | 0 | $seqstring and $seqstring =~ /\S/ |
| 601 | 0 | 0 | 0 | $@ and UNIVERSAL::isa($@, 'Bio::Phylo::Util::Exceptions::InvalidData') |
| 720 | 0 | 0 | 0 | $seqstring and $seqstring =~ /\S/ |
| 722 | 0 | 0 | 0 | $@ and UNIVERSAL::isa($@, 'Bio::Phylo::Util::Exceptions::InvalidData') |
| 737 | 0 | 0 | 0 | $taxa_id and $name eq $taxa_id |
| line | l | !l | condition |
|---|---|---|---|
| 245 | 0 | 0 | $forest->get_name || '' |
| 544 | 0 | 0 | $seqs[0]->alphabet || $seqs[0]->_guess_alphabet || 'dna' |
| 550 | 0 | 0 | $aln->missing_char || '?' |
| 0 | 0 | $aln->match_char || '.' | |
| 0 | 0 | $aln->gap_char || '-' | |
| 592 | 0 | 0 | $seq->alphabet || $seq->_guess_alphabet || 'dna' |
| 716 | 0 | 0 | $seq->alphabet || $seq->_guess_alphabet || 'dna' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 146 | 0 | 0 | 0 | $mol_type eq 'dna' or $mol_type eq 'rna' |
| 0 | 0 | 0 | $mol_type eq 'dna' or $mol_type eq 'rna' or $mol_type eq 'protein' | |
| 289 | 0 | 0 | 0 | $new_node_id ||= 'internal_' . $newNode->_creation_id |
| 320 | 0 | 0 | 0 | $parentID ||= 'internal_' . $parent_node->_creation_id |
| 362 | 0 | 0 | 0 | $mol_type eq 'dna' or $mol_type eq 'rna' |
| 0 | 0 | 0 | $mol_type eq 'dna' or $mol_type eq 'rna' or $mol_type eq 'protein' | |
| 636 | 0 | 0 | 0 | UNIVERSAL::isa($obj, 'Bio::Align::AlignI') or UNIVERSAL::isa($obj, 'Bio::Seq') |