| line |
true |
false |
branch |
|
172
|
3 |
14 |
if (defined $primer_file) { } |
|
180
|
14 |
3 |
if defined $template |
|
182
|
2 |
15 |
if defined $attach_primers |
|
201
|
17 |
66 |
if (defined $template) |
|
202
|
0 |
17 |
unless (ref $template and $template->isa('Bio::PrimarySeqI')) |
|
206
|
17 |
0 |
unless ($template->isa('Bio::SeqI')) |
|
234
|
19 |
27 |
if (defined $primer) |
|
255
|
19 |
10 |
if (defined $primer) |
|
268
|
7 |
31 |
if ($primer eq '') { } |
|
269
|
3 |
4 |
$type eq 'fwd' ? : |
|
271
|
0 |
1 |
unless (ref $primer and $primer->isa('Bio::PrimarySeqI') || $primer->isa('Bio::SeqFeature::Primer')) |
|
277
|
1 |
30 |
$primer->isa('Bio::SeqFeature::Primer') ? : |
|
278
|
16 |
15 |
$type eq 'fwd' ? : |
|
308
|
0 |
3 |
unless (defined $primer_file) |
|
316
|
0 |
3 |
unless (defined $fwd_primer) |
|
323
|
2 |
1 |
if (defined $rev_primer) { } |
|
351
|
2 |
21 |
if (defined $attach) |
|
373
|
18 |
22 |
unless (defined $template_str) |
|
380
|
21 |
19 |
if ($template_str =~ /$re/g) |
|
382
|
5 |
16 |
$rev_match ? : |
|
390
|
19 |
21 |
unless ($amplicon) |
|
401
|
0 |
18 |
unless ($self->template) |
|
404
|
0 |
1 |
unless ($self->fwd_primer or $self->rev_primer) |
|
420
|
17 |
41 |
unless (defined $self->{'regexp'}) |
|
428
|
1 |
16 |
if ($fwd_regexp eq '^') { } |
|
439
|
2 |
15 |
if ($rev_regexp eq '$') { } |
|
450
|
1 |
16 |
$fwd_regexp eq '^' ? : |
|
454
|
2 |
15 |
$rev_regexp eq '$' ? : |
|
518
|
1 |
20 |
if ($self->attach_primers) |
|
523
|
1 |
1 |
if ($type eq 'fwd') { } |
|
526
|
0 |
1 |
unless defined $primer_seq |
|
533
|
1 |
0 |
unless defined $primer_seq |
|
551
|
1 |
0 |
if ($type eq 'fwd') { } |