| line |
true |
false |
branch |
|
114
|
12 |
0 |
unless (defined $self->sequence_factory) |
|
148
|
12 |
0 |
if (ref $self->{'_filehandle'} eq 'GLOB') { } |
|
190
|
9 |
54 |
if ($ms_info_line[$word] eq '-I') { } |
|
|
9 |
45 |
elsif ($ms_info_line[$word] eq '-s') { } |
|
197
|
0 |
9 |
if (not defined $pop_haplos[-1] or $pop_haplos[-1] =~ /\D/) |
|
209
|
3 |
9 |
unless (@pop_haplos) |
|
238
|
4 |
3 |
if (defined $self->{'SEGSITES'}) { } |
|
302
|
7 |
7 |
if (defined $value) |
|
303
|
1 |
6 |
unless $value =~ /^\d+$/ and $value > 0 |
|
498
|
4 |
2 |
if ($pops[$#pops] == 1 and not defined $self->{'NO_OUTGROUP'} and @pops > 1) { } |
|
522
|
37 |
18 |
if ($last_read_hap < $pops[$pop_num]) { } |
|
551
|
7 |
128 |
unless $seqstring |
|
566
|
63 |
65 |
if (defined $n_sites) |
|
570
|
1 |
62 |
unless $segsites <= $n_sites |
|
592
|
62 |
65 |
defined $n_sites ? : |
|
647
|
23 |
125 |
if ($self->{'TOT_RUN_HAPS'} == $self->{'LAST_READ_HAP_NUM'} + 1) |
|
657
|
2 |
144 |
if (not defined $seqstring and $last_read_hap < $self->get_tot_haps) |
|
692
|
0 |
18 |
if ($haps_to_pull == 0) |
|
698
|
3 |
47 |
unless defined $seq |
|
740
|
3 |
68 |
unless defined $seq |
|
792
|
0 |
160 |
unless (ref $fh eq 'GLOB') |
|
794
|
0 |
160 |
unless (defined $times and $times > 0) |
|
798
|
28 |
132 |
if (defined $self->{'BUFFER_HAP'}) |
|
809
|
10 |
134 |
unless defined $data |
|
818
|
0 |
134 |
if ($data eq '//') |
|
824
|
35 |
125 |
if ($end_run) |
|
843
|
5 |
30 |
unless (defined $data) |
|
854
|
28 |
2 |
if ($data eq '//') { } |
|
865
|
28 |
56 |
if ($_ eq '1') { } |
|
|
28 |
28 |
elsif ($_ eq '2') { } |
|
875
|
0 |
28 |
unless (defined $data) |