Subroutine Coverage
| Bio/Matrix/PSM/SiteMatrix.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
24 |
28 |
85.7
|
| pod |
21 |
21 |
100.0
|
| line |
count |
pod |
subroutine |
|
159
|
5 |
n/a |
BEGIN |
|
161
|
5 |
n/a |
BEGIN |
|
207
|
14 |
Yes |
new |
|
312
|
12 |
n/a |
_calculate_consensus |
|
339
|
0 |
Yes |
calc_weight |
|
372
|
104 |
Yes |
next_pos |
|
407
|
2 |
Yes |
curpos |
|
424
|
3 |
Yes |
e_val |
|
441
|
1 |
Yes |
IC |
|
459
|
0 |
Yes |
accession_number |
|
478
|
8 |
Yes |
consensus |
|
503
|
2 |
Yes |
width |
|
519
|
0 |
Yes |
sites |
|
538
|
5 |
Yes |
IUPAC |
|
570
|
267 |
n/a |
_to_IUPAC |
|
622
|
267 |
n/a |
_to_cons |
|
657
|
1 |
Yes |
get_string |
|
690
|
3 |
Yes |
get_array |
|
710
|
1 |
Yes |
get_logs_array |
|
731
|
12 |
Yes |
id |
|
749
|
1 |
Yes |
regexp |
|
789
|
1 |
Yes |
regexp_array |
|
830
|
3 |
n/a |
_compress_array |
|
860
|
3 |
n/a |
_uncompress_string |
|
889
|
2 |
Yes |
get_compressed_freq |
|
929
|
1 |
Yes |
get_compressed_logs |
|
958
|
1 |
Yes |
sequence_match_weight |
|
989
|
0 |
Yes |
get_all_vectors |