| line |
true |
false |
branch |
|
148
|
0 |
0 |
unless ($file_string =~ /^\>/) |
|
155
|
0 |
0 |
if (exists $self->{'_filehandle'} and defined $self->{'_filehandle'}) { } |
|
221
|
0 |
0 |
unless $self->{'_parsed'} |
|
240
|
0 |
0 |
unless ($self->{'_parsed'}) |
|
260
|
0 |
0 |
unless ($self->{'_parsed'}) |
|
269
|
0 |
0 |
if defined $$self{"_${elt}iter"} |
|
353
|
0 |
0 |
if (defined $taxa_hash{$nexml_id}) { } |
|
358
|
0 |
0 |
if defined $taxa_o |
|
374
|
0 |
0 |
if (defined $taxa_hash{$aln->{'_Nexml_ID'}}) { } |
|
384
|
0 |
0 |
if defined $taxa_o |
|
395
|
0 |
0 |
if (defined $taxa_hash{$seq->{'_Nexml_ID'}}) { } |
|
404
|
0 |
0 |
if (defined $seq_matrices{$seq->{'_Nexml_matrix_ID'}}) { } |
|
414
|
0 |
0 |
if defined $taxa_o |
|
419
|
0 |
0 |
if $feat->has_tag('id') |
|
427
|
0 |
0 |
if ($forest->first) |
|
456
|
0 |
0 |
unless ($self->{'_parsed'}) |
|
466
|
0 |
0 |
if (/^fasta$/i) |
|
480
|
0 |
0 |
if ($remove_spaces) |
|
506
|
0 |
0 |
unless ($self->{'_parsed'}) |
|
538
|
0 |
0 |
unless ($self->{'_parsed'}) |