| Bio/Tools/Phylo/PAML.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 32 | 34 | 94.1 |
| pod | 2 | 2 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 198 | 1 | n/a | BEGIN |
| 199 | 1 | n/a | BEGIN |
| 203 | 1 | n/a | BEGIN |
| 206 | 1 | n/a | BEGIN |
| 210 | 1 | n/a | BEGIN |
| 211 | 1 | n/a | BEGIN |
| 212 | 1 | n/a | BEGIN |
| 213 | 1 | n/a | BEGIN |
| 214 | 1 | n/a | BEGIN |
| 215 | 1 | n/a | BEGIN |
| 216 | 1 | n/a | BEGIN |
| 217 | 1 | n/a | BEGIN |
| 236 | 20 | Yes | new |
| 263 | 20 | Yes | next_result |
| 458 | 20 | n/a | _parse_summary |
| 583 | 16 | n/a | _parse_inputparams |
| 600 | 16 | n/a | _parse_codon_freqs |
| 642 | 2 | n/a | _parse_aa_freqs |
| 695 | 0 | n/a | _parse_StarDecomposition |
| 702 | 3 | n/a | _parse_aa_dists |
| 769 | 18 | n/a | _parse_patterns |
| 807 | 26 | n/a | _parse_seqs |
| 858 | 16 | n/a | _parse_codoncts |
| 861 | 16 | n/a | _parse_distmat |
| 942 | 8 | n/a | _parse_PairwiseCodon |
| 1020 | 2 | n/a | _parse_YN_Pairwise |
| 1068 | 13 | n/a | _parse_Forestry |
| 1181 | 9 | n/a | _parse_NSsitesBatch |
| 1401 | 6 | n/a | _parse_Pos_selected_sites |
| 1450 | 10 | n/a | _parse_branch_dnds |
| 1483 | 2 | n/a | _parse_nt_freqs |
| 1531 | 2 | n/a | _parse_nt_dists |
| 1607 | 0 | n/a | _parse_rate_parametes |
| 1651 | 20 | n/a | _parse_rst |