| line |
count |
pod |
subroutine |
|
93
|
1 |
n/a |
BEGIN |
|
98
|
1 |
n/a |
BEGIN |
|
135
|
9 |
Yes |
new |
|
244
|
14 |
Yes |
model_num |
|
262
|
12 |
Yes |
model_description |
|
279
|
7 |
Yes |
time_used |
|
296
|
15 |
Yes |
kappa |
|
313
|
17 |
Yes |
num_site_classes |
|
332
|
12 |
Yes |
dnds_site_classes |
|
355
|
1 |
Yes |
get_pos_selected_sites |
|
372
|
8 |
Yes |
add_pos_selected_site |
|
396
|
1 |
Yes |
get_NEB_pos_selected_sites |
|
414
|
8 |
Yes |
add_NEB_pos_selected_site |
|
440
|
0 |
Yes |
get_BEB_pos_selected_sites |
|
459
|
9 |
Yes |
add_BEB_pos_selected_site |
|
475
|
5 |
Yes |
next_tree |
|
491
|
2 |
Yes |
get_trees |
|
507
|
0 |
Yes |
rewind_tree_iterator |
|
521
|
9 |
Yes |
add_tree |
|
542
|
4 |
Yes |
shape_params |
|
559
|
15 |
Yes |
likelihood |