| line |
true |
false |
branch |
|
132
|
0 |
9 |
$handler ? : |
|
138
|
9 |
0 |
if (not defined $self->sequence_factory) |
|
168
|
1848 |
18 |
if ($ann) { } |
|
169
|
114 |
1734 |
if ($ann eq 'FT') { } |
|
171
|
108 |
6 |
if ($data =~ /^(\w+)\s+([\d\?\<]+)\s+([\d\?\>]+)(?:\s+?(\S.*))?/ox) { } |
|
|
0 |
6 |
elsif ($data =~ m[^\s+/([^=]+)(?:=(.+))?]ox) { } |
|
173
|
108 |
0 |
if ($seqdata) |
|
181
|
108 |
0 |
if defined $loc1 |
|
187
|
0 |
0 |
ref $seqdata->{$qual} ? : |
|
|
0 |
0 |
$seqdata->{$qual} ? : |
|
191
|
6 |
0 |
if ($ct == 0) { } |
|
192
|
6 |
0 |
$seqdata->{$qual} ? : |
|
195
|
0 |
0 |
unless (ref $seqdata->{$qual}) |
|
200
|
0 |
0 |
$seqdata->{$qual}[$ct] ? : |
|
204
|
905 |
829 |
if ($ann ne $lastann) |
|
205
|
263 |
642 |
if (not $SEC{$ann} and $seqdata) |
|
211
|
280 |
625 |
!$SEC{$ann} ? : |
|
212
|
280 |
625 |
unless $SEC{$ann} |
|
214
|
0 |
1734 |
if $ann eq '//' |
|
215
|
17 |
1717 |
if $ann eq 'SQ' |
|
217
|
829 |
888 |
$seqdata->{$annkey} ? : |
|
225
|
17 |
99 |
if (index($line, '//') == 0) { } |
|
240
|
0 |
19 |
if $seqdata |
|
271
|
9 |
19 |
if ($handler) |
|
272
|
0 |
9 |
unless ref $handler and $handler->isa('Bio::HandlerBaseI') |