| line |
count |
pod |
subroutine |
|
81
|
1 |
n/a |
BEGIN |
|
84
|
1 |
n/a |
BEGIN |
|
85
|
1 |
n/a |
BEGIN |
|
86
|
1 |
n/a |
BEGIN |
|
103
|
3 |
n/a |
_initialize |
|
165
|
3 |
n/a |
_read_start |
|
247
|
3 |
Yes |
get_segsites |
|
267
|
48 |
Yes |
get_current_run_segsites |
|
282
|
3 |
Yes |
get_pop_mut_param_per_site |
|
297
|
3 |
Yes |
get_pop_recomb_param_per_site |
|
312
|
3 |
Yes |
get_nsites |
|
327
|
3 |
Yes |
get_selpos |
|
342
|
3 |
Yes |
get_nreps |
|
357
|
3 |
Yes |
get_nfiles |
|
372
|
3 |
Yes |
get_traj_filename |
|
387
|
3 |
Yes |
get_runs |
|
402
|
3 |
Yes |
get_Positions |
|
417
|
3 |
Yes |
get_tot_run_haps |
|
432
|
3 |
Yes |
get_mbs_info_line |
|
447
|
0 |
No |
get_tot_haps |
|
464
|
53 |
No |
get_next_run_num |
|
481
|
42 |
Yes |
get_last_haps_run_num |
|
498
|
45 |
Yes |
get_last_read_hap_num |
|
521
|
1 |
Yes |
outgroup |
|
540
|
43 |
Yes |
get_next_seq |
|
590
|
47 |
Yes |
get_next_hap |
|
623
|
9 |
Yes |
get_next_run |
|
672
|
45 |
No |
get_base_conversion_table |
|
686
|
50 |
n/a |
_get_next_clean_hap |
|
730
|
11 |
n/a |
_load_run_info |