| line |
count |
pod |
subroutine |
|
624
|
3 |
n/a |
BEGIN |
|
627
|
3 |
n/a |
BEGIN |
|
628
|
3 |
n/a |
BEGIN |
|
629
|
3 |
n/a |
BEGIN |
|
632
|
3 |
n/a |
BEGIN |
|
657
|
1 |
Yes |
new |
|
674
|
1 |
n/a |
DESTROY |
|
705
|
12 |
Yes |
seq |
|
745
|
9 |
Yes |
group_tag |
|
767
|
28863 |
Yes |
partonomy |
|
778
|
1 |
n/a |
_default_partonomy |
|
866
|
22 |
Yes |
structure_type |
|
894
|
2 |
Yes |
get_problems |
|
913
|
1 |
Yes |
clear_problems |
|
922
|
6 |
No |
add_problem |
|
934
|
6 |
No |
problem |
|
970
|
0 |
Yes |
report_problems |
|
1004
|
0 |
Yes |
ignore_problems |
|
1031
|
7 |
Yes |
error_threshold |
|
1043
|
15023 |
No |
get_container_type |
|
1060
|
15023 |
n/a |
_get_partonomy_roots |
|
1108
|
11 |
Yes |
unflatten_seq |
|
1662
|
2080 |
n/a |
_split_group_if_disconnected |
|
1698
|
2083 |
n/a |
_remove_duplicates_from_group |
|
1793
|
11 |
Yes |
unflatten_groups |
|
1837
|
2078 |
Yes |
unflatten_group |
|
1881
|
2 |
n/a |
__ANON__ |
|
2221
|
1288 |
No |
find_best_matches |
|
2322
|
0 |
n/a |
_write_group |
|
2341
|
0 |
n/a |
_write_sf |
|
2348
|
0 |
n/a |
_write_sf_detail |
|
2357
|
0 |
n/a |
_write_hier |
|
2380
|
962 |
n/a |
_resolve_container_for_sf |
|
2520
|
4568 |
n/a |
_get_splice_coords_for_sf |
|
2564
|
2035 |
Yes |
feature_from_splitloc |
|
2605
|
3 |
n/a |
BEGIN |
|
2714
|
1 |
Yes |
infer_mRNA_from_CDS |
|
2820
|
0 |
Yes |
remove_types |
|
2856
|
2039 |
n/a |
_check_order_is_consistent |
|
2915
|
18524 |
n/a |
_locstr |
|
2922
|
0 |
No |
iterate_containment_tree |
|
2931
|
0 |
No |
find_best_pairs |