| line |
true |
false |
branch |
|
207
|
0 |
6 |
unless $q_length > 0 |
|
212
|
0 |
6 |
unless $match_total > 0 |
|
217
|
1 |
5 |
if (defined $lastquery and $lastquery ne $q_name) { } |
|
|
2 |
3 |
elsif (not defined $lastquery) { } |
|
|
0 |
3 |
elsif ($lasthit ne $t_name) { } |
|
335
|
3 |
2 |
if ($strand eq '+') { } |
|
401
|
30 |
8 |
if ($strand eq '+') { } |
|
425
|
1 |
2 |
if (defined $lasthit or defined $lastquery) |
|
448
|
9 |
82 |
if (my $type = $Bio::SearchIO::psl::MODEMAP{$nm}) |
|
450
|
9 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
456
|
2 |
89 |
if ($nm eq 'PSLOutput') |
|
483
|
9 |
82 |
if (my $type = $Bio::SearchIO::psl::MODEMAP{$nm}) { } |
|
|
82 |
0 |
elsif ($Bio::SearchIO::psl::MAPPING{$nm}) { } |
|
484
|
9 |
0 |
if ($self->_eventHandler->will_handle($type)) |
|
493
|
0 |
82 |
if (ref($Bio::SearchIO::psl::MAPPING{$nm}) =~ /hash/i) { } |
|
511
|
2 |
89 |
if defined $nm and defined $Bio::SearchIO::psl::MODEMAP{$nm} and $Bio::SearchIO::psl::MODEMAP{$nm} eq 'result' |
|
548
|
0 |
82 |
unless defined $data->{'Data'} |
|
549
|
0 |
82 |
if ($data->{'Data'} =~ /^\s+$/) |
|
550
|
0 |
0 |
unless $data->{'Name'} =~ /Hsp\_(midline|qseq|hseq)/ |
|
553
|
0 |
82 |
if ($self->in_element('hsp') and $data->{'Name'} =~ /Hsp\_(qseq|hseq|midline)/) |
|
577
|
9 |
0 |
if (defined $value) |
|
600
|
0 |
0 |
if not defined $name || defined $self->{'_elements'} or scalar @{$self->{'_elements'};} == 0 |
|
602
|
0 |
0 |
if ($_ eq $name) |
|
624
|
0 |
82 |
unless defined $self->{'_elements'}[0] |
|
696
|
3 |
2 |
if @_ |