| line |
true |
false |
branch |
|
158
|
0 |
385 |
defined $ithresh ? : |
|
160
|
5 |
380 |
if defined $hit_filter |
|
161
|
5 |
380 |
if defined $signif |
|
162
|
5 |
380 |
if defined $score |
|
163
|
5 |
380 |
if defined $bits |
|
221
|
0 |
180 |
if (defined $data->{'runid'} and not $data->{'runid'} =~ /^\s+$/) |
|
224
|
0 |
0 |
if (not $data->{'runid'} =~ /^lcl\|/) { } |
|
232
|
0 |
0 |
if (my @a = split(/\|/, $data->{'RESULT-query_name'}, 0)) |
|
235
|
0 |
0 |
if not defined $acc or $acc =~ /^\s+$/ |
|
248
|
96 |
84 |
$self->isa('Bio::SearchIO::IteratedSearchResultEventBuilder') ? : |
|
255
|
96 |
84 |
$self->isa('Bio::SearchIO::IteratedSearchResultEventBuilder') ? : |
|
290
|
0 |
7792 |
if (defined $data->{'runid'} and not $data->{'runid'} =~ /^\s+$/) |
|
293
|
0 |
0 |
if (not $data->{'runid'} =~ /^lcl\|/) { } |
|
301
|
0 |
0 |
if (my @a = split(/\|/, $data->{'RESULT-query_name'}, 0)) |
|
304
|
0 |
0 |
if not defined $acc or $acc =~ /^\s+$/ |
|
315
|
0 |
1372 |
if (defined $data->{'HSP-query_frame'} and $data->{'HSP-query_frame'} < 0 && $data->{'HSP-query_start'} < $data->{'HSP-query_end'} || $data->{'HSP-query_frame'} > 0 && $data->{'HSP-query_start'} > $data->{'HSP-query_end'}) |
|
327
|
0 |
1372 |
if (defined $data->{'HSP-hit_frame'} and defined $data->{'HSP-hit_frame'} && $data->{'HSP-hit_frame'} < 0 && $data->{'HSP-hit_start'} < $data->{'HSP-hit_end'} || defined $data->{'HSP-hit_frame'} && $data->{'HSP-hit_frame'} > 0 && $data->{'HSP-hit_start'} > $data->{'HSP-hit_end'}) |
|
346
|
971 |
6821 |
unless (defined $data->{'HSP-query_length'}) |
|
347
|
126 |
845 |
if (my $hsp_qry_seq = $data->{'HSP-query_seq'}) { } |
|
355
|
5678 |
2114 |
unless (defined $data->{'HSP-hit_length'}) |
|
356
|
131 |
5547 |
if (my $hsp_hit_seq = $data->{'HSP-hit_seq'}) { } |
|
374
|
0 |
7792 |
unless $self->{'_hsps'} |
|
421
|
0 |
5890 |
unless scalar @hsp_data > 0 or exists $data->{'HIT-significance'} |
|
427
|
0 |
8391 |
if (exists $args{'-name'} and $args{'-name'} =~ /BL_ORD_ID/) |
|
435
|
979 |
7412 |
unless (defined $args{'-significance'}) |
|
436
|
979 |
0 |
if (defined $args{'-hsps'} and $args{'-hsps'}[0]) |
|
461
|
2 |
5943 |
if ($hit_filter) { } |
|
465
|
1 |
1 |
unless &$hit_filter($hit) |
|
468
|
55 |
5888 |
if ($self->{'_confirm_significance'}) |
|
469
|
50 |
5 |
unless $hit_signif <= $self->{'_max_significance'} |
|
471
|
1215 |
4728 |
if ($self->{'_confirm_score'}) |
|
473
|
1211 |
4 |
unless $hit_score >= $self->{'_min_score'} |
|
475
|
2 |
5941 |
if ($self->{'_confirm_bits'}) |
|
477
|
2 |
0 |
unless $hit_bits >= $self->{'_min_bits'} |
|
481
|
4681 |
1264 |
if $add_hit |
|
504
|
0 |
1502 |
unless (defined $f and ref $f and $f->isa('Bio::Factory::ObjectFactoryI')) |
|
539
|
385 |
102 |
if @_ |
|
561
|
5 |
0 |
if (@_) |
|
563
|
0 |
5 |
if ($sig =~ /[^\d.e-]/ or $sig <= 0) |
|
601
|
5 |
0 |
if (@_) |
|
603
|
0 |
5 |
if ($score =~ /[^\de+]/ or $score <= 0) |
|
632
|
5 |
0 |
if (@_) |
|
634
|
0 |
5 |
if ($bits =~ /[^\de+]/ or $bits <= 0) |
|
661
|
5 |
0 |
if (@_) |
|
663
|
0 |
5 |
unless (ref $func eq 'CODE') |