Subroutine Coverage
| Bio/Search/Tiling/MapTiling.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
43 |
47 |
91.4
|
| pod |
22 |
24 |
91.6
|
| line |
count |
pod |
subroutine |
|
171
|
1 |
n/a |
BEGIN |
|
172
|
1 |
n/a |
BEGIN |
|
177
|
1 |
n/a |
BEGIN |
|
178
|
1 |
n/a |
BEGIN |
|
179
|
1 |
n/a |
BEGIN |
|
180
|
1 |
n/a |
BEGIN |
|
183
|
1 |
n/a |
BEGIN |
|
203
|
519 |
Yes |
new |
|
263
|
268 |
Yes |
next_tiling |
|
283
|
2 |
Yes |
rewind_tilings |
|
317
|
1 |
Yes |
get_tiled_alns |
|
446
|
538 |
Yes |
identities |
|
474
|
538 |
Yes |
conserved |
|
503
|
1051 |
Yes |
length |
|
538
|
1058 |
Yes |
frac |
|
609
|
3 |
Yes |
frac_identical |
|
638
|
3 |
Yes |
frac_conserved |
|
662
|
4 |
Yes |
frac_aligned |
|
673
|
2 |
No |
frac_aligned_query |
|
674
|
2 |
No |
frac_aligned_hit |
|
694
|
4 |
Yes |
num_aligned |
|
713
|
0 |
Yes |
num_unaligned |
|
739
|
8 |
Yes |
range |
|
766
|
332 |
Yes |
coverage_map |
|
801
|
0 |
Yes |
coverage_map_as_text |
|
854
|
5229 |
Yes |
hit |
|
871
|
1768 |
Yes |
hsps |
|
893
|
1032 |
Yes |
contexts |
|
914
|
505 |
Yes |
mapping |
|
933
|
298 |
Yes |
default_context |
|
952
|
0 |
Yes |
algorithm |
|
989
|
207 |
n/a |
_calc_coverage_map |
|
1101
|
532 |
n/a |
_calc_stats |
|
1219
|
3 |
n/a |
_make_tiling_iterator |
|
1230
|
271 |
n/a |
__ANON__ |
|
1284
|
270 |
n/a |
_tiling_iterator |
|
1302
|
8297 |
n/a |
_check_type_arg |
|
1311
|
3721 |
n/a |
_check_action_arg |
|
1327
|
4613 |
n/a |
_check_context_arg |
|
1358
|
546 |
n/a |
_make_context_key |
|
1397
|
546 |
n/a |
_context |
|
1410
|
2253 |
n/a |
_has_sequence_data |
|
1420
|
0 |
n/a |
_has_logical_length |
|
1433
|
546 |
n/a |
_has_strand |
|
1444
|
546 |
n/a |
_has_frame |
|
1466
|
8 |
n/a |
_contig_intersection |
|
1496
|
4 |
n/a |
_reported_length |