Subroutine Coverage
| Bio/Search/HSP/PullHSPI.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
28 |
32 |
87.5
|
| pod |
28 |
28 |
100.0
|
| line |
count |
pod |
subroutine |
|
126
|
2 |
n/a |
BEGIN |
|
128
|
2 |
n/a |
BEGIN |
|
142
|
179 |
n/a |
_setup |
|
198
|
68 |
n/a |
_raw_hsp_data |
|
222
|
4 |
Yes |
algorithm |
|
236
|
0 |
Yes |
pvalue |
|
250
|
16 |
Yes |
evalue |
|
269
|
18 |
Yes |
frac_identical |
|
295
|
0 |
Yes |
frac_conserved |
|
316
|
20 |
Yes |
num_identical |
|
331
|
2 |
Yes |
num_conserved |
|
346
|
0 |
Yes |
gaps |
|
368
|
14 |
Yes |
query_string |
|
382
|
17 |
Yes |
hit_string |
|
399
|
11 |
Yes |
homology_string |
|
419
|
36 |
Yes |
length |
|
445
|
2 |
Yes |
hsp_length |
|
459
|
4 |
Yes |
percent_identity |
|
474
|
4 |
Yes |
get_aln |
|
519
|
164 |
Yes |
seq_inds |
|
613
|
4 |
Yes |
significance |
|
627
|
8 |
Yes |
score |
|
641
|
8 |
Yes |
bits |
|
659
|
14 |
Yes |
strand |
|
692
|
14 |
Yes |
start |
|
725
|
14 |
Yes |
end |
|
758
|
12 |
Yes |
seq |
|
797
|
19 |
Yes |
seq_str |
|
826
|
4 |
Yes |
rank |
|
850
|
0 |
Yes |
matches |
|
914
|
4 |
Yes |
n |
|
934
|
4 |
Yes |
range |