Subroutine Coverage

Bio/DB/IndexedBase.pm
Criterion Covered Total %
subroutine 61 71 85.9
pod 20 20 100.0


line count pod subroutine
245 2 n/a BEGIN
248 2 n/a BEGIN
249 2 n/a BEGIN
250 2 n/a BEGIN
251 2 n/a BEGIN
252 2 n/a BEGIN
253 2 n/a BEGIN
254 2 n/a BEGIN
256 2 n/a BEGIN
259 2 n/a BEGIN
260 2 n/a BEGIN
262 2 n/a BEGIN
263 2 n/a BEGIN
264 2 n/a BEGIN
265 2 n/a BEGIN
267 2 n/a BEGIN
291 2 n/a BEGIN
367 20 Yes new
428 1 Yes newFh
449 38 Yes dbmargs
466 2 Yes glob
483 9 Yes index_dir
505 6 Yes get_all_primary_ids
523 10 Yes index_file
530 18 n/a _default_index_name
547 1 Yes index_files
568 38 Yes index_name
585 0 Yes path
603 3 Yes get_PrimarySeq_stream
620 22 Yes get_Seq_by_id
642 0 n/a _calculate_offsets
649 20 n/a _index_files
708 38 n/a _open_index
720 45 n/a _close_index
739 45 n/a _parse_compound_id
771 2997 n/a _guess_alphabet
783 3053 n/a _makeid
790 105 n/a _check_linelength
802 20 n/a _calc_termination_length
823 88 n/a _calc_offset
835 49 n/a _fh
844 48 n/a _fhcache
881 1 Yes offset
899 16 Yes strlen
917 30 Yes length
935 0 Yes linelen
953 0 Yes headerlen
972 0 Yes header_offset
990 13 Yes alphabet
1013 59 Yes file
1021 58 n/a _fileno2path
1027 125 n/a _path2fileno
1038 3052 n/a _packSmall
1043 0 n/a _packBig
1048 209 n/a _unpackSmall
1053 0 n/a _unpackBig
1059 20 n/a _set_pack_method
1081 2 n/a TIEHASH
1086 3 n/a FETCH
1091 0 n/a STORE
1096 0 n/a DELETE
1101 0 n/a CLEAR
1106 1 n/a EXISTS
1111 4 n/a FIRSTKEY
1116 9 n/a NEXTKEY
1121 27 n/a DESTROY
1150 2 n/a BEGIN
1154 4 n/a new
1163 10 n/a next_seq
1172 1 n/a TIEHANDLE
1177 1 n/a READLINE