| Bio/AlignIO/Handler/GenericAlignHandler.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 29 | 32 | 90.6 |
| pod | 11 | 11 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 5 | 3 | n/a | BEGIN |
| 6 | 3 | n/a | BEGIN |
| 8 | 3 | n/a | BEGIN |
| 9 | 3 | n/a | BEGIN |
| 10 | 3 | n/a | BEGIN |
| 11 | 3 | n/a | BEGIN |
| 12 | 3 | n/a | BEGIN |
| 13 | 3 | n/a | BEGIN |
| 14 | 3 | n/a | BEGIN |
| 15 | 3 | n/a | BEGIN |
| 17 | 3 | n/a | BEGIN |
| 39 | 7 | Yes | new |
| 52 | 7 | Yes | handler_methods |
| 62 | 562 | Yes | data_handler |
| 77 | 9 | Yes | reset_parameters |
| 84 | 30 | Yes | format |
| 94 | 192 | Yes | get_params |
| 111 | 0 | Yes | set_params |
| 115 | 9 | Yes | build_alignment |
| 126 | 134 | Yes | annotation_collection |
| 139 | 0 | Yes | seq_annotation_collection |
| 152 | 9 | Yes | process_seqs |
| 204 | 319 | n/a | _generic_metaseq |
| 223 | 18 | n/a | _generic_consensus_meta |
| 232 | 0 | n/a | _generic_locatableseq |
| 252 | 85 | n/a | _generic_store |
| 262 | 22 | n/a | _generic_reference |
| 272 | 85 | n/a | _generic_simplevalue |
| 279 | 6 | n/a | _generic_comment |
| 288 | 27 | n/a | _stockholm_target |
| 335 | 174 | n/a | _from_nse |
| 364 | 27 | n/a | _from_stk_dblink |